Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05748 ATGCAGTGGTCATTCTCAAACAAGGTCTCAGCCCTTCCTCAATTCCTGTCCTTCAAGACAACTCAGGAAGATAGGCCAAGAAACACTATTCTTGATCCTCTAGCTTCATCTGGATACATGACCATCTCAACTAAAGATGCTTTTGATTCTAACCAGAAACCATTCATGGGTGTGACCCAGAAAAATTTGCCAATAGGCAAGCAAGCAGGAAACAAACTTGGAATGACAGTTTACCCTCTGCAATGTTCTGATACACAGTCAGCTTGCCTTCAGGAAACAAGAATATTTTCAGTTTCCAACCAATCTAATCAAGTGAGTCCTGTTCTTCAATCTAATCTGGCTACTACAGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTATTCTTTCCAAATCCTCTGGAACACCTGTATCTGTTCATCCATCAATAGGTTCCATTGTTGGCTCTACTGACTTAAGAAATTGTTCCAAATCCTGTGGCACACCTGCTCAGCTGACCATTTTCTATGCTGGTTCAGTATGTGTGTTTGATGACATATCTCCTGAGAAGGCACAGGCTATCATGTTACTAGCTGGAAATGGGGCTACTCCAATTCAAAACATGACAGTTTCAACACCTAAATTGCAGCCAGAAATCTCTATTCCCTCCAAAAATGATGGTTTCACAATAAGCCAATCCTATCCCTCACCCTCACCCATGCCAAGCCCTCTCCCAATTGCCTCTCATGCCAGTTCTCAGCCTAGGGGAAGATCTTCTAGCAACAATGAACTTGCAATAATAAGACCAGTAGGACCTTCAACAGCTCCTACTAACCATTTGGACTCTCCTATTGTTGTTGGTCCTGTAGGATCTGCAGCTAAAAAAATGGTTCAACCAGTATGCTTGCCTCAGGCACGTAAAGCATCCTTGGCTCGGTTTTTGGAGAAGCGAAAGGAAAGAGTAATGAGCACATCACCATACTATATGTGCAAGCAATCACCTGAATGCAGCAGCACTCCTGGATCAGACAGTGTTAGTTTCTCCATGGATTTCTCTGGTTCCTGTCCTCTACCTGCCACTAACTAG 1071 0.4314 MQWSFSNKVSALPQFLSFKTTQEDRPRNTILDPLASSGYMTISTKDAFDSNQKPFMGVTQKNLPIGKQAGNKLGMTVYPLQCSDTQSACLQETRIFSVSNQSNQVSPVLQSNLATTGLNMVNSVIKPQPILSKSSGTPVSVHPSIGSIVGSTDLRNCSKSCGTPAQLTIFYAGSVCVFDDISPEKAQAIMLLAGNGATPIQNMTVSTPKLQPEISIPSKNDGFTISQSYPSPSPMPSPLPIASHASSQPRGRSSSNNELAIIRPVGPSTAPTNHLDSPIVVGPVGSAAKKMVQPVCLPQARKASLARFLEKRKERVMSTSPYYMCKQSPECSSTPGSDSVSFSMDFSGSCPLPATN. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05748 356 MobiDBLite consensus disorder prediction 240 255 - -
Seca9g05748 356 SMART tify_2 160 195 IPR010399 -
Seca9g05748 356 MobiDBLite consensus disorder prediction 211 255 - -
Seca9g05748 356 ProSiteProfiles Tify domain profile. 160 195 IPR010399 -
Seca9g05748 356 Pfam tify domain 163 194 IPR010399 -
Seca9g05748 356 MobiDBLite consensus disorder prediction 211 230 - -
Seca9g05748 356 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 101 334 IPR040390 -
Seca9g05748 356 Pfam Jas motif 298 323 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05748 Seca-Chr9 168612476 168616092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05748 1 328 Tify Gene Family AT3G17860 40.118 4.43e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca9g05748 tify 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05748 K13464 - gmx:100807288 499.204