Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05744 ATGCAAATGCAACCTCACAAATTGTTCACTCTCTCTTCTTCCACCATCACCATTGTCTTCCTTCTACTTCTCCTCCCTCTCGCCAAACCAGATCTCTCCGCCGAGCGCGCCGCCCTCTTATCCCTCCGCTCCGCCGTCGGCGGCAGAACCCTCCTCTGGAACACCACCTCCACCACCCCCTGCACCTGGTTCGGCGTCCAATGCGACCCAAACAACACTCATGTCGTCCAGCTTCACCTCCCCGGCGTCGCTCTCTCCGGCGACCTTCCCGCCGGCGTGTTCTCCAAGCTCCCTAACCTCCGCACCCTCAGTCTCCGCTTCAACGCCCTCTCTGGCCCCCTTCCCTCCGACCTCGCTGCTTGCTCTTCCCTCCGTAACCTCTACCTCCAGCAGAACCTCCTCTCCGGTGAAGTTCCGGCGTCTTTGTTCCGCCTCACTGGTCTCGTTCGCCTCAACTTGGCCTCCAACAACTTCTCCGGTCCGATTCCGGTCGGGTTTCGGAACCTGACCCGGCTCAGGACACTGTTTCTCCAGAATAACCGGTTCTCCGGTTCACTGCCTGAGTTGAACCGGGGCGAGCTCGCTCAGTTCAATGTCTCCAACAACATGCTAAACGGTTCTGTGCCTGAAAAGCTGCGAACTTTTTCTAAAGATTCGTTTTTGGGTAATTTCCTCTGTGGGAAGCCCCTTGAGCCTTGTCCTGGGGATGCAGATAGTGGGAATGGTGCTAATGGGACTTCAAGTGTGGTTGGAGACAGTGAAGGGATGGGAATGAAGGAGAAGAAGAGCAAGTTGTCTGGTGGTGCTATTGCTGGGATTGTTATTGGGTCTGTGGTGGTGCTTTTGTTGGTTGTTTTTGCTTTGATTCTTTTGTGCAGGAACAAGAATGGTGAAAAGACTAGTTCTGTTGATGACGTGGCAGCAACTGTGAAGCATTTGGAGCAGGTGGAAATGAGGGGTGAGAATGTTGAGAATGGTAATGGGTACCCGGCGGTGGCGGTGAATGGTGGTGGCAGGGGTGAAGGGATTGGTGGTGGTAGAGGTAAAAAGTTGGTGTTTTTTGGTAATTCCGGTAAGGTGTTTGATTTGGAGGATTTGCTTAGAGCTTCTGCTGAGGTTTTGGGGAAAGGGACGTTTGGGACTGCTTATAAGGCTGTTTTGGAGGTTGGGCCTGTGGTTGCTGTGAAGAGGTTGAAGGATGTGACTATTTCTGAGAAAGAATTCAAGGAGAAGATTGAAGGGGTTGGAGCAATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACATGCCAATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGGGGTAGGACACCACTGAATTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTAGAGGCATTGAGTACCTACATTCACAAGGGCCTAATGTTTCTCATGGAAACATAAAGTCATCTAACATCCTCCTAACCAAGTCCTATGATGCCAGAGTATCTGATTTTGGCCTTGCACACCTTGTTGGTCCCTCATCCACACCCAACAGGGTTGCTGGCTACCGTGCTCCTGAGGTAACTGATCCTCGCAAAGTAACTCAAAAGGCAGATGTATACAGCTTTGGTGTGTTGCTCTTGGAACTTTTGACTGGAAAGGCTCCTACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCCAGATGGGTGCAATCAGTTGTTAAAGAAGAGTGGACTTCAGAGGTCTTTGATCTTGAGCTGCTTAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTAGATTGTGCAGCCACATACCCTGATGACCGCCCTTCAATGTCTGAAGTGAGACAGCACATAGAAGAGTTACATAGGTCTAGCTTGAAAGAGGGTCAAGACCAAATCCAACAACCTGATTTGATCAATAATCATATAGCTGATATGTCTTCTCAATGA 1998 0.5 MQMQPHKLFTLSSSTITIVFLLLLLPLAKPDLSAERAALLSLRSAVGGRTLLWNTTSTTPCTWFGVQCDPNNTHVVQLHLPGVALSGDLPAGVFSKLPNLRTLSLRFNALSGPLPSDLAACSSLRNLYLQQNLLSGEVPASLFRLTGLVRLNLASNNFSGPIPVGFRNLTRLRTLFLQNNRFSGSLPELNRGELAQFNVSNNMLNGSVPEKLRTFSKDSFLGNFLCGKPLEPCPGDADSGNGANGTSSVVGDSEGMGMKEKKSKLSGGAIAGIVIGSVVVLLLVVFALILLCRNKNGEKTSSVDDVAATVKHLEQVEMRGENVENGNGYPAVAVNGGGRGEGIGGGRGKKLVFFGNSGKVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGPVVAVKRLKDVTISEKEFKEKIEGVGAMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSALLHGNKGGGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVTQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAATYPDDRPSMSEVRQHIEELHRSSLKEGQDQIQQPDLINNHIADMSSQ. 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05744 665 MobiDBLite consensus disorder prediction 644 665 - -
Seca9g05744 665 FunFam pollen receptor-like kinase 1 341 442 - -
Seca9g05744 665 SMART LRR_typ_2 169 192 IPR003591 -
Seca9g05744 665 SMART LRR_typ_2 97 121 IPR003591 -
Seca9g05744 665 SMART LRR_typ_2 145 168 IPR003591 -
Seca9g05744 665 PANTHER OS05G0588300 PROTEIN 18 641 - -
Seca9g05744 665 MobiDBLite consensus disorder prediction 235 258 - -
Seca9g05744 665 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515
Seca9g05744 665 Gene3D Transferase(Phosphotransferase) domain 1 443 661 - -
Seca9g05744 665 SUPERFAMILY L domain-like 48 214 - -
Seca9g05744 665 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Seca9g05744 665 CDD STKc_IRAK 374 637 - -
Seca9g05744 665 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Seca9g05744 665 MobiDBLite consensus disorder prediction 641 665 - -
Seca9g05744 665 Gene3D Phosphorylase Kinase; domain 1 347 442 - -
Seca9g05744 665 SUPERFAMILY Protein kinase-like (PK-like) 372 635 IPR011009 -
Seca9g05744 665 Gene3D Ribonuclease Inhibitor 194 233 IPR032675 -
Seca9g05744 665 FunFam Probable inactive receptor kinase RLK902 32 190 - -
Seca9g05744 665 FunFam Probable inactive receptor kinase At1g48480 443 645 - -
Seca9g05744 665 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Seca9g05744 665 Pfam Protein kinase domain 371 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05744 665 ProSiteProfiles Protein kinase domain profile. 368 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05744 Seca-Chr9 168532968 168536229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05744 31 653 Receptor kinase-like Gene Family AT1G48480 62.205 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca9g05744 Pkinase 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05744 - - gmx:100781597 879.011