Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05742 ATGTATCATTTTCCTTGTTATGCTTTTCAGAACCGAAACCCAATATCCATGCCATTCCCCTATGCCACCCTCAACCTATTCACCATTGCATCATCTTCTTCCACTGTCCCTGTTGCCACCTTTGGTGGATTTAGTACCACCGCTTCCAAGCTCATGCTCAAAACGACGGGTCGTTTTCCCTTTTCCACAACCAAGAACCGCTCCCGTGCGGCAGTGATCAGAGCCAAAGCGGGAACTGATTACTACTCCACCTTAAATGTTAGCAGCAATGCGACCCTGCGAGAAATCAAGAGCGCCTATCGAAAACTAGCTCGCAAGTACCATCCAGATATGAACAAAAGCCCTGGGGCAGAGGAGAAGTTCAAGGAGATCAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGAAGGGTCAGCCAGTGCTTCAGGGGTGGATCCTTTTGATTTATTTGATGCATTTTTTGGTCGTTCGGATGGACTATTTCGAGATGTTGATGAAGGAGGCATCAACTTCAATTTCAGAAAAAATAGAAACCGTGGTCATGATATTCGGTATGACCTTCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGAGAGAAATTGAAGTTTCTTGTTTTCAGACATGTAATGATTGTGATGGTTCTGGAGCTAAATCAAGAAATTGCATTAGACAATGCATGAATTGTGGTGGCAGAGGAGGAGAAATGAAAAGTCAGAAAACACCCTTTGGAATGATGTCTCAGGTTTCTACATGCTCTAAGTGTGGAGGTGTTGGCAAGATAATCACTGATCACTGTCGAAGATGTGATGGCAGTGGTCAAGTGCAAGCTAAACGAACAATGGAAGTGGTCATTCCTCCTGGAATCAATGATGGAGACACAATGCAAATTCGAGGAGAAGGGAATTTTGATAAGAAGAGGCGTTATACTGGGGATCTTTTTGTTGTCCTCCATGTAGATGAAAAGCAAGGAATTTGGAGAGAGGGTCTTCATTTATACTCAAAGATTAACATTGACTTCACCGAGGCAATACTGGGGTCTGTTAAAAAGGTAGAAACTGTTGAAGGTTTAAGGGACCTCCAAATTCCTTCCGGGATTCAACCTGGAGATTCAGTGAAGTTCTCACGTTTGGGAGTTCCAGACATGAAAAAACCATCTATTCGAGGCGATCATTACTTCATTGTGAATGTTCTTATTCCTAAAAATATCAGTGGCGTCGAACGTGAACTTGTTGAGCAGTTAGCTTCACTAAGGGCATCTAGCAAAGGTGATCATTGTCTTCTAATGACACTGGGGATATCTAAAGGTAAATCCAATGAATTCGTAAAGAGGGATCCGAAAAATGATGCTTCAAGCAAGGGAATAAAAAATGTTGATTCTTTATGGAGATCAATCAAGAACTTTTTAAGGAGAGGAAAGTCTGAAGAAAGGTTTGCTTCAATTAGCCAGGATACATCAGCGTCGCTGTGGAGATTTAGCCACCAAAATAATTCAGTCCCAGATTTCATTTTTGTTGTCTTCATTTTAACTTTGATTTTTGCATCTATAGCAAAGTCTAAGCACTCATTATTTCAGAAAAGAAGCCATTCATTTATTAATAGAAGACTTGGTGAAAAAAATTAA 1677 0.4085 MYHFPCYAFQNRNPISMPFPYATLNLFTIASSSSTVPVATFGGFSTTASKLMLKTTGRFPFSTTKNRSRAAVIRAKAGTDYYSTLNVSSNATLREIKSAYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENEGSASASGVDPFDLFDAFFGRSDGLFRDVDEGGINFNFRKNRNRGHDIRYDLHLSFEESIFGGQREIEVSCFQTCNDCDGSGAKSRNCIRQCMNCGGRGGEMKSQKTPFGMMSQVSTCSKCGGVGKIITDHCRRCDGSGQVQAKRTMEVVIPPGINDGDTMQIRGEGNFDKKRRYTGDLFVVLHVDEKQGIWREGLHLYSKINIDFTEAILGSVKKVETVEGLRDLQIPSGIQPGDSVKFSRLGVPDMKKPSIRGDHYFIVNVLIPKNISGVERELVEQLASLRASSKGDHCLLMTLGISKGKSNEFVKRDPKNDASSKGIKNVDSLWRSIKNFLRRGKSEERFASISQDTSASLWRFSHQNNSVPDFIFVVFILTLIFASIAKSKHSLFQKRSHSFINRRLGEKN. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05742 558 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Seca9g05742 558 Gene3D - 197 333 - -
Seca9g05742 558 CDD DnaJ_C 199 421 - -
Seca9g05742 558 Gene3D - 344 435 - -
Seca9g05742 558 Gene3D - 227 291 - -
Seca9g05742 558 CDD DnaJ_zf 227 291 IPR001305 GO:0031072|GO:0051082
Seca9g05742 558 SUPERFAMILY HSP40/DnaJ peptide-binding domain 345 429 IPR008971 GO:0006457|GO:0051082
Seca9g05742 558 CDD DnaJ 80 133 IPR001623 -
Seca9g05742 558 ProSiteProfiles dnaJ domain profile. 80 144 IPR001623 -
Seca9g05742 558 Hamap Chaperone protein DnaJ [dnaJ]. 77 486 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca9g05742 558 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 55 437 - -
Seca9g05742 558 SMART dnaj_3 79 136 IPR001623 -
Seca9g05742 558 SUPERFAMILY Chaperone J-domain 77 180 IPR036869 -
Seca9g05742 558 SUPERFAMILY HSP40/DnaJ peptide-binding domain 194 351 IPR008971 GO:0006457|GO:0051082
Seca9g05742 558 Pfam DnaJ C terminal domain 200 418 IPR002939 -
Seca9g05742 558 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 214 294 IPR036410 -
Seca9g05742 558 Pfam DnaJ central domain 227 291 IPR001305 GO:0031072|GO:0051082
Seca9g05742 558 Gene3D DnaJ domain 77 180 IPR036869 -
Seca9g05742 558 ProSiteProfiles Zinc finger CR-type profile. 214 296 IPR001305 GO:0031072|GO:0051082
Seca9g05742 558 Pfam DnaJ domain 80 141 IPR001623 -
Seca9g05742 558 PRINTS DnaJ domain signature 116 136 IPR001623 -
Seca9g05742 558 PRINTS DnaJ domain signature 82 100 IPR001623 -
Seca9g05742 558 PRINTS DnaJ domain signature 136 155 IPR001623 -
Seca9g05742 558 PRINTS DnaJ domain signature 100 115 IPR001623 -
Seca9g05742 558 FunFam Molecular chaperone DnaJ 219 296 - -
Seca9g05742 558 FunFam Chaperone protein dnaJ A6 chloroplastic 77 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05742 Seca-Chr9 168474837 168489531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05742 81 141 C2H2 Transcription Factor Family AT1G74250 41.791 3.25e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05742 K03686 - gmx:100782135 809.675