Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05740 ATGTCGCGCAAAGTGAATTTTGTTGGAGAAATTGATCGAACCAAAGAATCATGGAAGTTGGCTGTTAGAGTGACCAATGTTTGGCGTTCAGAAAATTACATGGATGTGATTTTCATGGATGAGAAGGGAGGAAAAATACATGCATCATTGAATGAATCAGATTTGCGGAAATTAAATGTTGTCATAGAAGAGCGTAACACTTACAGTATTAAAAACTTGGAAGTCAAAGAGAATACTGGTAAGTATAAGTTATGCAACCACCTATACAAGGTTGGATTCATGAAAGGAACCAATGTTCGACAAGTTGATTTCCCTCAAATTCCTCTAAATGTGTTCCAATTTACAAGCTTTGAGGATATAATCAAAGGAAATGCTTCCACTGATGTGTTAATAGATGTAATTGGAGAGTTCATTGACATTCAACAACATATCGATGAAAGCATACCCAGGAAATTGGTTGTGGTCATGAAGGATCAAAGTGGCCACACTATAAGCTGGACTTTGTGGGAGGAGTATGCAAGCCAGGTTTTCTCTTTTCTAGGAACACATGAAGGTGGCCCAATCATCATGCTACTTAGTCTTGCCCTAATAAAAGAAGCTAAGGGAAACTTCCCAGTTACTGTTCAAAATACAAAGGTTCACTCAAGGCTATACATCAATGAAGACATTGATGAGATCAATAAATTCAAAAGCAGCTTGGACTCAACTCATGTGTATGAGTCATACAGTCAAAAACTGAGTCAGTTGTCTTCGTCAAGTCATGTTACCCAAGGAGAAACATTTATTCAAGATGAAAATGTCATGAGTTTAGCTAAAATCAATGAGACCCAAGAGGAAATATTTTGCCTCACTGTTGGGAAAATAGAGATGATATATGTTAGCAATGGTTGGCAGTATGATGCATATGTTAAGTGTAGCAAGAAACTGGAGTCTGAAACTGAGCCATTTATATGTGCAAGGTGTGGAAAGCTAAACTCTGAACGAGTTCCTAGGTTCAGGTTAGAGGTAAAAGTTTCTGACAAGAATGCGCATTCAAAGTTCATTCTATGGGATAAGCATTGTGTCCAACTGTTGAACCAGAGTGCCCTGGATCTTAAGAAGCAAATGATCCAGGAGGAAGGAGTCTTTGAACCAATGGAACTCCCTGGACCCATAGATTCTATTCTAGGCAAGGTTCTTGCTTTCAAGATTAAGATCCAACTAAAGTGCAAAGGTTATTCAGTTCACCAAATCTCTGAAGATCCACAAATTATTGAATCAATCATTGGGTCAATTAAAAAGAATGAGGGTGCTGGGAAGATTGAGAAAGGAAAACTTGTCTGCTCAGGTGTTAATGAAGTTGATTACATGGACAGTGTAAGTAATTTTCATGTAAATTCACCAAAGCAATATTGTTATACAAAACCTGTCTACTTTTAA 1419 0.3756 MSRKVNFVGEIDRTKESWKLAVRVTNVWRSENYMDVIFMDEKGGKIHASLNESDLRKLNVVIEERNTYSIKNLEVKENTGKYKLCNHLYKVGFMKGTNVRQVDFPQIPLNVFQFTSFEDIIKGNASTDVLIDVIGEFIDIQQHIDESIPRKLVVVMKDQSGHTISWTLWEEYASQVFSFLGTHEGGPIIMLLSLALIKEAKGNFPVTVQNTKVHSRLYINEDIDEINKFKSSLDSTHVYESYSQKLSQLSSSSHVTQGETFIQDENVMSLAKINETQEEIFCLTVGKIEMIYVSNGWQYDAYVKCSKKLESETEPFICARCGKLNSERVPRFRLEVKVSDKNAHSKFILWDKHCVQLLNQSALDLKKQMIQEEGVFEPMELPGPIDSILGKVLAFKIKIQLKCKGYSVHQISEDPQIIESIIGSIKKNEGAGKIEKGKLVCSGVNEVDYMDSVSNFHVNSPKQYCYTKPVYF. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05740 472 PANTHER OS03G0429900 PROTEIN 8 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g05740 472 Pfam Replication factor-A C terminal domain 286 377 IPR013955 -
Seca9g05740 472 Gene3D - 106 243 IPR012340 -
Seca9g05740 472 Gene3D - 3 101 IPR012340 -
Seca9g05740 472 Gene3D - 250 421 IPR012340 -
Seca9g05740 472 Pfam Domain of unknown function DUF223 36 130 IPR003871 -
Seca9g05740 472 SUPERFAMILY Nucleic acid-binding proteins 273 402 IPR012340 -
Seca9g05740 472 SUPERFAMILY Nucleic acid-binding proteins 9 101 IPR012340 -
Seca9g05740 472 SUPERFAMILY Nucleic acid-binding proteins 112 238 IPR012340 -
Seca9g05740 472 CDD RPA1_DBD_B_like 132 234 - -
Seca9g05740 472 CDD RPA1_DBD_A_like 19 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05740 Seca-Chr9 168459803 168464666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05740 1 374 Core DNA Replication Machinery Family AT5G08020 23.990 1.20e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05740 - - gmx:102661204 269.626