Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05713 ATGAGCTTGCAGCTTCGAAGAGAACGGAGGAATTGGTCCAGGGTTCCATCACAACCTGCTCCTCGTCAAGAATGGGTTCCTAGAAGGAGTGGATCATCCACCACTGTTGTCCAGCCATCAGATTCACCCTCACTTCAGAATGCTGATGCTGGTTCTTCCAGTCAAGGTGTTGCCGTTGCTCCACCCCCTATTCACCGTAGAAACAATCATGGTGCTCATAGGGTGGAGAGGGATGGAGATAGAGGGAGGAATGGGAATCAAGTGGGGAAGGGATTGAGGGACTCTAGTTTGCCTCAATTGGTGCAGGAGATTCAAGAGAAGCTCTTGAAAGGCGCTGTGGAGTGCATGATTTGCTATGACATGGTTCGGAGGTCTGCGCCTATTTGGTCTTGCACTAGCTGCTACTCTATCTTTCACCTGAATTGCATCAAGAAGTGGGCTAGAGCACCCACCTCTGTTGATTTGTCTGCAGAGAAGAATCAAGGGTTTAATTGGCGGTGTCCTGGTTGTCAATCTGTGCAGCTTACATCTTCGAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAGAGGCTGGACCCTCCATCTGATTTGTATCTAACACCACATTCGTGTGGGGAACCATGTGGGAAGCCTCTTGAGAGGGAGGTGTTGGTTATTGGAGGGAGTAAGGATGATCTTTGTCCTCATGTTTGTGTCTTGCAGTGTCATCCTGGTCCATGCCCTCCTTGTAAAGCATTTGCCCCTCCTCGTTTGTGCCCTTGTGGGAAGAAAACAATTACCACCAGATGCTCTGACCGGCAGTCTGTTCTTACCTGTGGCCAGTGTTGTGATAAGCTTCTTGAATGTGGACGTCATAGCTGTGAACGTATTTGTCATGTAGGTCCTTGTGATTGTTGTCATGTTTTAGTCAATGCGTCTTGCTTTTGCAATAAAAGCACGGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAATTAAATGCAGAAGGTGGAGTTTATTCTTGTGGTTCCAATTGTGGAAAGAAACTTAGTTGTGGCAATCATATCTGTAGGGAGATTTGTCATCCAGGCAACTGCGGGGAGTGCGAATTTTTGCCAAGCCGGGTGAAGACATGCTGTTGTGGGAAAACAAGGTTGGAGGAGGAACGGCAGAGTTGTTTGGATGCAATACCTACCTGCTCACAAGTATGTGGCAAACTCCTTCACTGTGGGACACATACTTGTAAGGAGACATGTCATGTTGGGGAATGTCCACCTTGTTTGGTTCTGGTTTCACAGAAGTGCCGCTGTGGCTCAACTTCCCGAACTGTGGAGTGCCATAAAGCGATAATGGAGAAACAGAAATTTACTTGTGAAAAGACTTGTGGGAGAAAAAAGAACTGTGGAAGGCATCGATGTAGTGAAAGATGTTGTCCACTTTCTAATCCAAACAATACTTTAAGCAGGGATTGGGATCCTCACTTTTGTTCAATGCCATGCGGAAAGAAGCTAAGATGTGGCCAGCATGCATGTGAATCACTGTGCCATAGTGGTCATTGCCCGCCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCTCTACCCTGTGGTACACCACCTCCTTCATGTCAGCTTCCTTGTTCAGTTCCTCAGCCATGTGGCCATTCAGGTTCTCACAGTTGCCATTTTGGAGATTGCCCTCCATGTTCAGTCCCTGTATCAAAAGAATGCATTGGTGGCCATGTAATTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAATCCCTGTGGGAAGACCAGGCAATGTGGTTTACATGCATGTGGCAGAGCATGTCACCCTCCACCTTGTGATAATCCATCTAGTGTGCAAGGTTTGCGAGCGTCATGTGGCCAAACATGTGGTGCTCCAAGGAGAGGCTGCCGGCATTCGTGTGTGGCATCATGTCACCCTTCATCTCCTTGCCCAGATATAAGGTGTGAATTTCTTGTTACAATTACATGTTCTTGCGGCCGTATAACAGCAACTGTTCCTTGTGATGCTGGTGGTAGCAGTAGTAATTATAATGCTGATGCCATACATGAAGCTTCTATCATTCAAAAATTACCTGTGCCACTTCAACCAGTTGATGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGACGAGGAATGTGCTAAGTTGGAGCGTAAAAAGCTTCTTGCTGATGCTTTTGACATCACTCCAAGTCTGGATTCTCTCCATTTTGGTGATAGTTCTCTCTCTTCTGAATTGCTTTCTGACATGTTCAGGCGTGATCCAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAAATTTTAGTGCTTGGCAAGAGCAAAGGAACTACACATGGTTTAAAAGTCCATGTTTTTTGTCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGTTCATTGCTGAAAGATGGAAGCTTGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGATTTATTGTTGTTTCTGTTACCCCAAAATCAAAGGCTCCAGCTCGTGTGCTAGGGGTTAAGGGTACCACAACTTTGAATGCACCCCTTCCTACTGCATTTGATCCCCTGGTAGATATGGACCCACGGCTTGTTGTCTCATTTCCAGACTTACCAAGGGATGCTGATATTAGTGCCTTGGTGTTGAGATTTGGCGGTGAGTGTGAACTTGTTTGGTTGAATGACAAGAATGCTTTGGCTGTTTTTCACGATCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCGGTTGCTCCAAATGTTGGGGCATCAGCGGCATCTTCTGCTACCAATGCCTGGGGAGGAGCTGGGACACTGAAAGAGGGAGGTTCACTGTCAGCATTGAAGGGTAATAATCCATGGAAAAAGGCTGTGGTTCAGGAGCATGGTTGGAAAGAAGACTCTTGGGGTGATGAAGAATGGACTCCTGGTTCTGCAACTATTCAGCCATCTGTTTGGAAGATAGAAGCACCAATAACCGCATCATTAAATCCTTGGAATGTGTTAGACCAGGAATCAAGTTCAGGTTCATCGATTACTACTGCTAGAACTGAAGCTTCTGGGAAACAGACTGGAAACATTGGTGTCTCAAGGTTGGAGTCTCATGCAGGTGGCTCAAATGAAGGAGGGCAGCAACTTGGAGGAAACCTAGATGCAGCAGAAGTTTCTGAAGTAGTGGATGATTGGGAGAAGGCTTATGAATGA 3288 0.4623 MSLQLRRERRNWSRVPSQPAPRQEWVPRRSGSSTTVVQPSDSPSLQNADAGSSSQGVAVAPPPIHRRNNHGAHRVERDGDRGRNGNQVGKGLRDSSLPQLVQEIQEKLLKGAVECMICYDMVRRSAPIWSCTSCYSIFHLNCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRLDPPSDLYLTPHSCGEPCGKPLEREVLVIGGSKDDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRQSVLTCGQCCDKLLECGRHSCERICHVGPCDCCHVLVNASCFCNKSTEVILCGDMAVKGELNAEGGVYSCGSNCGKKLSCGNHICREICHPGNCGECEFLPSRVKTCCCGKTRLEEERQSCLDAIPTCSQVCGKLLHCGTHTCKETCHVGECPPCLVLVSQKCRCGSTSRTVECHKAIMEKQKFTCEKTCGRKKNCGRHRCSERCCPLSNPNNTLSRDWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECIGGHVILRNIPCGSKDIRCNNPCGKTRQCGLHACGRACHPPPCDNPSSVQGLRASCGQTCGAPRRGCRHSCVASCHPSSPCPDIRCEFLVTITCSCGRITATVPCDAGGSSSNYNADAIHEASIIQKLPVPLQPVDANGKKVPLGQRKLMCDEECAKLERKKLLADAFDITPSLDSLHFGDSSLSSELLSDMFRRDPKWVLAVEERCKILVLGKSKGTTHGLKVHVFCPMLKDKRDAVRFIAERWKLAVNAAGWEPKRFIVVSVTPKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSVAPNVGASAASSATNAWGGAGTLKEGGSLSALKGNNPWKKAVVQEHGWKEDSWGDEEWTPGSATIQPSVWKIEAPITASLNPWNVLDQESSSGSSITTARTEASGKQTGNIGVSRLESHAGGSNEGGQQLGGNLDAAEVSEVVDDWEKAYE. 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05713 1095 Pfam NF-X1 type zinc finger 404 421 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 557 574 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 610 625 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 346 363 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 462 473 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 500 517 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 282 299 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 Pfam NF-X1 type zinc finger 229 244 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 227 245 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 282 301 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 346 365 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 648 669 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 500 519 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 404 423 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 610 639 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 SMART znfxneu3 557 575 IPR000967 GO:0005634|GO:0008270
Seca9g05713 1095 CDD RING-CH-C4HC3_NFX1-like 114 171 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 204 265 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 272 320 - -
Seca9g05713 1095 MobiDBLite consensus disorder prediction 1032 1095 - -
Seca9g05713 1095 MobiDBLite consensus disorder prediction 27 54 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 490 533 - -
Seca9g05713 1095 MobiDBLite consensus disorder prediction 1032 1058 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 547 595 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 637 686 - -
Seca9g05713 1095 MobiDBLite consensus disorder prediction 69 84 - -
Seca9g05713 1095 MobiDBLite consensus disorder prediction 986 1006 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 394 442 - -
Seca9g05713 1095 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 66 1000 IPR034078 GO:0003700
Seca9g05713 1095 SUPERFAMILY RING/U-box 105 174 - -
Seca9g05713 1095 CDD NF-X1-zinc-finger 336 381 - -
Seca9g05713 1095 ProSiteProfiles Zinc finger PHD-type profile. 112 173 IPR019787 -
Seca9g05713 1095 ProSiteProfiles Zinc finger RING-type profile. 115 171 IPR001841 -
Seca9g05713 1095 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05713 Seca-Chr9 167675610 167678897 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Seca9g05713 zf-NF-X1 1.4 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05713 K12236 - gmx:100789059 1793.86