Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05694 ATGGAATCTAAGAGGAACAGTAGTATTGAGAACTACTACAACAGAGAAAAAGAAGAAGAAGATGAAGGTGAAGAGGAAAATAGTGAGATCCTCAAGAGAAGAATCTCTAGCCATCCTCTCTATGGACTCTTGGTTGAGGCTCACTTAGATTGTTTGAAGGTTGGTGACATTTCCAACTTGGACAGAGAGCTGAAGAAAGATCAGAAGCAAACAAAGAAGAAACAAAACTTGGGCATGTTCAGCCAGTCTGAGCTTGATCTCTTCATGGAAGCATATTGCTTGGCACTTAGCAAGCTCAAAGAAGCAATGGAGGAACCACAACAAAAGTCCATGGCTTTCATAAACAATATGCATTCACAACTTAGGGAACTCACAAAGGCAACCACTCCTTCAACTCCTGAACCAGCATCATCTTCAAGTGAGTGCACATTCAGAAGAAACCCTACAATTTAG 453 0.4106 MESKRNSSIENYYNREKEEEDEGEEENSEILKRRISSHPLYGLLVEAHLDCLKVGDISNLDRELKKDQKQTKKKQNLGMFSQSELDLFMEAYCLALSKLKEAMEEPQQKSMAFINNMHSQLRELTKATTPSTPEPASSSSECTFRRNPTI. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05694 150 Pfam KNOX2 domain 83 125 IPR005541 GO:0003677|GO:0005634
Seca9g05694 150 Coils Coil 9 34 - -
Seca9g05694 150 Pfam KNOX1 domain 31 55 IPR005540 GO:0003677|GO:0005634
Seca9g05694 150 SMART KNOX2_2 75 126 IPR005541 GO:0003677|GO:0005634
Seca9g05694 150 MobiDBLite consensus disorder prediction 1 27 - -
Seca9g05694 150 Coils Coil 57 77 - -
Seca9g05694 150 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 1 129 - -
Seca9g05694 150 MobiDBLite consensus disorder prediction 1 16 - -
Seca9g05694 150 MobiDBLite consensus disorder prediction 125 150 - -
Seca9g05694 150 SMART KNOX1_2 29 69 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05694 Seca-Chr9 167056232 167060802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05694 29 127 Homeobox Transcription Factor Family AT4G08150 35.238 1.41e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05694 - - aprc:113868091 212.231