Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05683 ATGGCCGTCGTCCGCCGCCACCCCGATCTCCGCCTCCCAGAACTCGCCGAACGCCGTCCTCGCTTCCCTGTCCCCCTTCCCACCACCACCATCAAGCACTCCTCCTCCGCCGCTGCCGGTGACGCCATCGCTCCAGCTGACCTCGAGAAGCTCGCTGTCCTCGGCCACGGAAACGGCGGCACCGTCTACAAGGTCCGCCACAAGGTCACCTCTGCCATCTACGCACTGAAAGTCGTCCACGGAAACTCCGACCCTACCACGCGCCGCCGAGCCATCGCTGAAATCAACATCCACCGACGCGCTGCTGATTGCCCTCACGTCGTCCGCTACCATGGCTCCTTCGAGAAACCTTCCGGCGACGTGGCGATTTTAATGGAGTACGTGGACTCCGGCACACTCGACACCATACTCAAAAAGAACGGAACATTCTCCGAACAGCGACTCTCAGCGGTGGCGCGTGATGTTCTCAACGGCCTCGCGTACCTCCACGCGCGCAACATCGCTCACCGTGACATCAAGCCCTCGAACCTCCTCGTGGATTCAAAAAACGAAGTTAAAATAGCTGACTTTGGAGTGAGCAAGCTCATGTGCCGCACGCTCGAAGCGTGCAACTCATACGTTGGCACGTGCGCTTACATGAGCCCTGAACGGTTCGATCCGGAAGCTTATGGCGGGAACTATAACGGTTTCGCTGCGGATATTTGGAGCTTGGGTTTGACCCTATTTGAACTCTATGTGGGTCATTTCCCTTTTCTTCAGGCGGGTCAGAGACCCGATTGGGCTTCCCTTATGTGTGCAATTTGCTTTGGCGACCCGCCAAGCCTCCCGGAGACTGCATCACCGGAGTTTCGGAGCTTTGTTGAGTGCTGCTTGAAAAAGGAGTCCGGTGATAGGTGGACAGCGTCTCAGCTCTTGACCCACCCGTTTGTGCGCAAAGATCCGGAATCTTGTTAA 954 0.5755 MAVVRRHPDLRLPELAERRPRFPVPLPTTTIKHSSSAAAGDAIAPADLEKLAVLGHGNGGTVYKVRHKVTSAIYALKVVHGNSDPTTRRRAIAEINIHRRAADCPHVVRYHGSFEKPSGDVAILMEYVDSGTLDTILKKNGTFSEQRLSAVARDVLNGLAYLHARNIAHRDIKPSNLLVDSKNEVKIADFGVSKLMCRTLEACNSYVGTCAYMSPERFDPEAYGGNYNGFAADIWSLGLTLFELYVGHFPFLQAGQRPDWASLMCAICFGDPPSLPETASPEFRSFVECCLKKESGDRWTASQLLTHPFVRKDPESC. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05683 317 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 33 312 - -
Seca9g05683 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca9g05683 317 CDD PKc_MAPKK_plant_like 47 312 - -
Seca9g05683 317 Gene3D Transferase(Phosphotransferase) domain 1 124 316 - -
Seca9g05683 317 FunFam Dual specificity mitogen-activated protein kinase kinase 32 128 - -
Seca9g05683 317 Pfam Protein kinase domain 49 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05683 317 SMART serkin_6 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05683 317 FunFam Mitogen-activated protein kinase 2 130 316 - -
Seca9g05683 317 ProSiteProfiles Protein kinase domain profile. 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05683 317 Gene3D Phosphorylase Kinase; domain 1 39 123 - -
Seca9g05683 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Seca9g05683 317 SUPERFAMILY Protein kinase-like (PK-like) 47 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05683 Seca-Chr9 166741649 166742602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05683 1 313 MAP Kinase Kinase Gene Family AT1G73500 58.544 1.37e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca9g05683 Pkinase 7.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05683 K20604 - gmx:100804100 528.865