Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05680 ATGGTTTTGGGTTGGAGAAGAAGGAAGAACAACCACCGTAAAGGTGGGAAATTGAACATGGAGGTGGTGATTCCCAACCACTTCAGGTGCCCAATTTCTCTTGATTTGATGAAGGATCCTGTCACATTGTCAACTGGGATCACCTATGATAGAGAGAGTGTGGAAAGGTGGTTTCATGAAGGGAACATCACTTGTCCTGTTACAAACCAAGTTGTGAGGAACTTTGACATGATCCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAAAATAGGCAATATGGGGTTGAGAGGATCCCAACTCCAAGAATACCTGTTAGCTCAATTGAGGTTTCTGACCTTCTTTTTCAAGTGAAGGCCTCAGCAAGAGGTTTGGACCAATATGGTTGCCTTGAATTGGTTCAGAAAATGGAGAGGTGGGGTTCAGAGAGTGAGAGGAACAAGAAGTGTATAGTGGACAATGGAGCACCAGGTGCATTGGCAGATGCATTTGATGCTTTTGCTAATGATTCTGTTGAGAGGAATGTGATTGTTCTTGAAGAGATTTTGTCTGCTCTCAATTGGATGTTTCCACTTCAATTGGAGGCCCATAAATCTTTGGGGTCTCATGCTTCTTTACATTGCATGATTTGGTTCTTGAAGCACCAAGATCTATCAGGGAAAGAGAAGTCCATTGTTGCATTGAAAGAGCTTCTTTCATTTGGTGATGTGAAGCATGTGGAGGCACTTTCAGAAATTGAAGGAGTCAATGAGCTTTTGGTGGATTTCATCAACAAGAGAATTAGTCCAAAGATCACAAAGGCTTCATTGAGGGTAATTTGGTACTTGTGTTCATCTTCTTCTCTTTCTAGTGAGAAGATCAAATTGGCATTTGTTGAATTGGGTTTGGTTTCTTCTCTTTTGGATATTCTCATTGACTCAGATAAGAGCCTTTGTGAAAAGGCTTTGGCTATTTTGGACTCACTTTGCAGCTGTGAAGGAGGGAGGGAAAAAGCTTATGGTAATGATCTCACAATTCCTGTGTTGGTGAAGAAAATATTGAGAGTTTCACCATTGACCACAGATTACTCTGTTTCTGCTATTTGGAAGCTTTGTAAATTTGGAGACAAAAATGAAGGAAGAGCTCTTGTTGAGGCACTTCAAGTTGGTGCCTTTCAGAAACTCTTGTTGGTATTGCAGGTTGGTTGTGGTGATGAGACCAAAGAGAAAGCAACTGAACTTCTCAAATTGCTGAATCCTTATAGGGCTGACTTGGAATGCATAGACTCAGATTTCAAGAATCTCAAGAGATCATTTTAA 1308 0.4067 MVLGWRRRKNNHRKGGKLNMEVVIPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFHEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQYGVERIPTPRIPVSSIEVSDLLFQVKASARGLDQYGCLELVQKMERWGSESERNKKCIVDNGAPGALADAFDAFANDSVERNVIVLEEILSALNWMFPLQLEAHKSLGSHASLHCMIWFLKHQDLSGKEKSIVALKELLSFGDVKHVEALSEIEGVNELLVDFINKRISPKITKASLRVIWYLCSSSSLSSEKIKLAFVELGLVSSLLDILIDSDKSLCEKALAILDSLCSCEGGREKAYGNDLTIPVLVKKILRVSPLTTDYSVSAIWKLCKFGDKNEGRALVEALQVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRADLECIDSDFKNLKRSF. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05680 435 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Seca9g05680 435 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Seca9g05680 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Seca9g05680 435 SUPERFAMILY ARM repeat 145 411 IPR016024 -
Seca9g05680 435 PANTHER WDSAM1 PROTEIN 21 415 IPR045185 GO:0061630
Seca9g05680 435 FunFam RING-type E3 ubiquitin transferase 24 95 - -
Seca9g05680 435 CDD RING-Ubox_PUB 25 77 IPR045210 -
Seca9g05680 435 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Seca9g05680 435 Gene3D - 120 414 IPR011989 -
Seca9g05680 435 SUPERFAMILY RING/U-box 22 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05680 Seca-Chr9 166616915 166618222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05680 5 435 U-box Gene Family AT5G37490 44.444 5.76e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05680 - - gmx:100794340 718.383