Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05651 ATGGAAGCAGGTGGAGGAGGACTCTCATTATCATCAGAGAACTGTCTCTATAGAGAGTGCTTAAGAAACCATGCAGCCAGCCTCGGCAGTTACGCCACCGACGGCTGCGGCGAGTTCACCCTCGACGACATGTCTCCTCCCGGGGGTGGAAGCCTCCAATGCGCCGCCTGTGGATGTCACCGGAACTTCCACCGGAAAGTGACGTATCCTCCGCCGACGAGCCATGTGAGGGAGCCGTCAGAGACGACAGGTGACCTGATGGACTATTCCGGCGGCGGAGGGGAGAGGTCGACGTCGATTGGGTCAAAGAAGAGGTTTAGGACGAAATTCACGGCGGAGCAGAAAGAGAAGATGTTGGGGTTTGCGGAGAAGTTAGGGTGGAAGCTTGTGAGGAAGGATCTGGATGAAGAGATAGAGAGATTCTGCAAAAGTGTTGGAGTGAGTAGACAAGTTTTCAAGGTTTGGATGCATAACCATAAGAACTCATCTAATTCTCTCTCTAATTCTTCCACTGCCAATGCCTCCTCTCTCACCCAGTAA 540 0.5278 MEAGGGGLSLSSENCLYRECLRNHAASLGSYATDGCGEFTLDDMSPPGGGSLQCAACGCHRNFHRKVTYPPPTSHVREPSETTGDLMDYSGGGGERSTSIGSKKRFRTKFTAEQKEKMLGFAEKLGWKLVRKDLDEEIERFCKSVGVSRQVFKVWMHNHKNSSNSLSNSSTANASSLTQ. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05651 179 MobiDBLite consensus disorder prediction 160 179 - -
Seca9g05651 179 SUPERFAMILY Homeodomain-like 90 161 IPR009057 -
Seca9g05651 179 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 17 66 IPR006456 -
Seca9g05651 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 162 - -
Seca9g05651 179 Pfam ZF-HD protein dimerisation region 15 68 IPR006456 -
Seca9g05651 179 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 17 67 IPR006456 -
Seca9g05651 179 NCBIfam homeobox domain, ZF-HD class 103 161 IPR006455 -
Seca9g05651 179 Gene3D - 90 166 - -
Seca9g05651 179 MobiDBLite consensus disorder prediction 70 100 - -
Seca9g05651 179 FunFam Zinc-finger homeodomain protein 2 92 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05651 Seca-Chr9 166102599 166103138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05651 17 162 ZF-HD Transcription Factor Family AT4G24660 46.667 8.75e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca9g05651 ZF-HD_dimer 6.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05651 - - jre:109020973 234.958