Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05649 ATGTTAGCCAATAACTTATCTCCATCATCAGTTCCCACTTCTGAGCCTTTTTCATGCTCTGAGAATGCCACTTCTGTCACCAATAAAAGAAAGAGAAGGCCTGCAGGAACTCCAGATCCAGATGCAGAGGTGGTGTCTCTGTCACCAAAGACTTTGTTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAAAACCTTCAGATGCATAGAAGGAGACACAAGGTACCATGGAAGCTCTTGAAGAGAGAGACACCTGTGGTGAGAAAAAGAGTGTTTGTGTGTCCTGAACCAACCTGTTTGCACCATGATCCATGCCATGCTTTAGGTGACCTTGTTGGGATAAAGAAACATTTCAGAAGGAAACACAGTAATCACAAACAATGGGTCTGTGAAAGATGCTCTAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACTTGTGGCACCAGAGGACACTCTTGTGATTGTGGCCGTGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGATGCTTGTAACATGGGAAGACTCAGGCCAGAATCTCAACCATCACTACAACCACCAGCTGCATGTTTATCAAGAACAGCTTCAAGCCCAAGCCCATCAAGTGAAACAAACTTCAGCACATGGCAAACAAAACTTCATCAGGTAATGCCAAAAAAACCAATAGATAATAATCATCAAACCAAACTATTCATCAACCCTATTGGTGAAACCTCATCCAAGAATCTCAAACTCCACCCAAATTTAGAGCTTCAACTCTCCACCACCACCAACAACAACATATCAAACTCAAACCCCATTCTTGGTTTACCATCACAAGAAAAAGATCATGAGAATGTTGTTAACCATTCAACCCAATTGCAACTCTCAATTGGGTCATCAGATATGAGTGGTGAGAAGAATGAGTCAAACAATAAGGAAAGTAGCAACACAATAAGCAGTGAGAATAACAACAACATGGGTAATTTGTTGAGGGTTCAAGAACAAGCAAGGGAGCATTTGAGGATAGCTATGGCAGAGAAAGCTTATGCTGAGGAAGCAAGGAAACAAGCAAAGAGACAGATTGAACTCGCTGAACAAGAGTTCACAAATGCAAAGAGGATAAGACAACAAGCACAAAGTGAACTTGATAAAGCATATGCCTTGAAAGAACATGCAATGAAGCAAGTGAACTCAACCATGCTTCAAATCACTTGCCATGCTTGTAAACAACAGTTTCAAGCACAAGATCATGAGAATTCATTGGTGTTAAGCTACATGTCTTCTGCTATAACCACAGAAGGTGGTGGAGAAGTAGAAAATGATAATGGAAAAGATCATGCCAAAACAAACTAG 1371 0.4143 MLANNLSPSSVPTSEPFSCSENATSVTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPSLQPPAACLSRTASSPSPSSETNFSTWQTKLHQVMPKKPIDNNHQTKLFINPIGETSSKNLKLHPNLELQLSTTTNNNISNSNPILGLPSQEKDHENVVNHSTQLQLSIGSSDMSGEKNESNNKESSNTISSENNNNMGNLLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQSELDKAYALKEHAMKQVNSTMLQITCHACKQQFQAQDHENSLVLSYMSSAITTEGGGEVENDNGKDHAKTN. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05649 456 Gene3D Classic Zinc Finger 120 195 - -
Seca9g05649 456 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 398 IPR031140 -
Seca9g05649 456 SMART c2h2final6 135 162 IPR013087 -
Seca9g05649 456 SMART c2h2final6 58 80 IPR013087 -
Seca9g05649 456 SMART c2h2final6 99 129 IPR013087 -
Seca9g05649 456 MobiDBLite consensus disorder prediction 268 288 - -
Seca9g05649 456 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Seca9g05649 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Seca9g05649 456 FunFam protein indeterminate-domain 12-like 37 105 - -
Seca9g05649 456 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Seca9g05649 456 Gene3D Classic Zinc Finger 36 98 - -
Seca9g05649 456 MobiDBLite consensus disorder prediction 197 219 - -
Seca9g05649 456 MobiDBLite consensus disorder prediction 301 332 - -
Seca9g05649 456 Coils Coil 346 401 - -
Seca9g05649 456 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Seca9g05649 456 MobiDBLite consensus disorder prediction 268 282 - -
Seca9g05649 456 MobiDBLite consensus disorder prediction 188 219 - -
Seca9g05649 456 MobiDBLite consensus disorder prediction 1 45 - -
Seca9g05649 456 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05649 Seca-Chr9 166020886 166023691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05649 21 446 C2H2 Transcription Factor Family AT2G01940 56.629 7.98e-151 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g05649 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05649 K25871 - gmx:100800187 677.552