Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05644 ATGACTTCATTACACAATGGAGAATCCTCCAACAAAAGTCCCTTATTGAGGTGTTTTCAAGCAAAATTGGATCCATCTGAGGCAACTATGCTTATAGATAGGAGATTTCATGCCATTTGGGAAAATCATTTCAATGATCGTTATTTCAGCTTAAGAGATCCTGAGCAAAATATTCATTGTGTTGGCACTATTAGGAATAGAGATGGTGATTATGTTTTCTATGTTGGAGTTCAATACATCATAGAGTTTTATCATTTGGAAGTTATCCATACTGTCCACTTCACCTATGCTGGGGACAAGTTCTTTGACATTAAAATATTTAATATACATGATAAGGAGATAAGTTATCCAAAAAATGGAGGTTGGGATAATTTCGTTCCCAACGACTCTGACCATATTGAGGTAGTAGAACAAGTCGAAGAAGGATGGACCGTCAGAGTCACAAAAGCCATCGAAAGTGGGAGTAATCCATTGCCACTTCCTGCTAAAATTGTCCGTAAGGTCCTTAAAGAGAACCAACGACTGGTGTACATCTTTGATAAGGATGAAAATGTCTACATTGTCGATCTGAGGTGTGGAAGAAGAATAGGAGAATGCTACTTCGGAATGGGATGGTATCAATTTGTTAAAGACAAAAAGCTGATCGAGGGAGACACTGTGGAGTTTAAATTTATTGATAGTCACAGAGACATTTATGTAAAAATAATTAGGGGTTGA 717 0.371 MTSLHNGESSNKSPLLRCFQAKLDPSEATMLIDRRFHAIWENHFNDRYFSLRDPEQNIHCVGTIRNRDGDYVFYVGVQYIIEFYHLEVIHTVHFTYAGDKFFDIKIFNIHDKEISYPKNGGWDNFVPNDSDHIEVVEQVEEGWTVRVTKAIESGSNPLPLPAKIVRKVLKENQRLVYIFDKDENVYIVDLRCGRRIGECYFGMGWYQFVKDKKLIEGDTVEFKFIDSHRDIYVKIIRG. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05644 238 SUPERFAMILY DNA-binding pseudobarrel domain 145 233 IPR015300 -
Seca9g05644 238 Pfam B3 DNA binding domain 153 237 IPR003340 GO:0003677
Seca9g05644 238 CDD B3_DNA 160 237 IPR003340 GO:0003677
Seca9g05644 238 Gene3D - 143 238 IPR015300 -
Seca9g05644 238 SMART B3_2 144 235 IPR003340 GO:0003677
Seca9g05644 238 ProSiteProfiles B3 DNA-binding domain profile. 143 238 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05644 Seca-Chr9 165909738 165911249 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g05644 B3 1.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05644 - K07300 psat:127080863 41.9726