Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05642 ATGGAGAACCAATCCTCTTCTAACAAGAATGAAACTCTTCCTATTCAGACCACATTCAAGACATCCTCCTCCTCTTCCTTCACCTATAGATTCACCTATGATGTATTCCTTAGCTTTAGAGGCACTGATACTCGCCACGGTTTTACTGGCAATCTCTCGAAAGCACTTTGTGAAAAAGGAATCCACACGTTCATTGATGATGAGAAACTTCAAAGAGGACATGAAATCACACCATCACTTCTCAAAGCTATTGAAGAGTCTAGAATTGCCATCATTGTGCTCTCTGAGAATTATGCATCTTCATCTTTTTGCTTAGATGAACTTTCAAAGATCATTGATTGCATCAAGGGAAATGGACGATTGGTTTTGCCGGTTTTTTATAATGTGGACCCTTCTGATGTGCGAAAGCAGAAAGGGACTTTTAGCTTGCATAAGAAGAACTTCAATGGTAACATGGATAGGTTGCTGAAATGGAAGACAGCTCTGCAACAAGTAGCTAACTTGTCTGGTTGGCATTTCAAACTTGGGGATGAATATGAACATGAGTTTATTGCGAAGATTGTTAAAGAGGTCTCCAACAAGATTAATCGTGTTCCTTTACATGTTGCGGAATACCCAGTTGGATTGGAATCCCAAGTAATACGAGTGAACTTGCTTTTGGATGTTGCATCTGATGATAAAGTCCACATGGTAGGGATCTATGGAATTGGAGGAATGGGTAAAACAACTCTTGCTGGAGCGGTTTATAATTCTATTGCTGACAAATTTGAAGGCTTATGTTTTCTTGATGATGTGAGAGAAAATTCAAATAAAAAAGGTTTGGTACATCTCCAAGAGATGCTTCTTTCTAAGGTACTTGGAGAGAAGGATATTAAGATTGGAAGTGTTAGAGAAGGAATTTCAATAATAAAGCACAGGCTACAACAAAAGAAGGTTCTTTTGATTTTGGATGATGTTGACAAACTGAAGCAGTTGCAAGTTATGGCTGGAGAACTCGATTGGTTTGGTCCTGGCAGCAGAGTAATCATTACCACACGGGACCGACATTTGCTTATAGGACATGGGATTGACAAAACCTATGAGATGCATGGGTTAAATGAGAAAGAAGCTCTTGAATTGTTTACGAGGAATGTAGCTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTGTGGAAAAGACATAGAAATATGGAAATCTACATTAGATCGGTATAAAAGGATTCCTCCCGAAGACATCCAAAAGATACTAAAAGTAAGCTATGATGGTTTGGAGGAAGAAGTGCAGAGTGTTTTCCTTGACATTGCATGTTGTTTCAAGGGATGTTATTTGGAAGAGGTCCAAAATATGCTTCATTCTCATTATGGTTATTGCATAGGATATCATATTGGAGTGTTGGTTGAAAAATCTCTCATAAAGACTAGTCCTGATCTGTGTAATTCTACTGTTACACTGCATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAATCACCGGAACAGCCTGGGGAACGTAGTAGATTATGGTTCACTAAAGATATAGTTCAAGTTTTAGAAGACAATACGGTTAGTCTTAAATGTATTGTGATTGATTTGTACTTTTTGTGTTCAAAGGGCACCCGTAAAATTCAAATGATATCTATGGATTCCCCTTTGGTTGAAGAAGTGGAATGGGATGGATATGCCTTCAAGAAGATGGAAAACCTCAAAACACTTATTATTAGAAAAGGTTGTTTTTCTGAAGGCCCCAATCATCTTCCAAATAGCTTGAGAGTACTGGAATGGCAGAGATATCCTTTACAGTATTTACCATCTGATTTTCATGCAAAGAAACTTATCACATGCAAGTTGCCCAATAGTAGCTTCACGTCATTCAAGTTTGCTGGTTTATTGGAGAAGGCAAGTCAATTCGTGAATTTGAAAAATCTAAATTTTGACCAATGTGAAGATTTAAGAGAGTTACCTGATGTATCAGCTCTGAAAAATTTAGAAAAGTTCTCATTTCAAGATTGTAAGAACTTAACTAGAGTTCATCATTCGGTTGGGTCACTGGATAAACTAAAAACCTTGAGTGCTAATGGTTGCAGCAGGCTTAGGAGCTTTCCACCCATCAAGTTAACCTCTCTTGAGCAGCTGTACCTTTCACATTGTGATAGTCTTGAGAGTTTTCCAGAGGTATCAGAAAAGATGGAAAATATAAGAGATATTTCGTTGACAGGCACTCCCTTAAAAGGATTGCCTTTTTCATTTCGAAATTTTACTCGGCTTCAGAGATTAGGATTGTCGGAATGTGGAATGTTTAGTTTACCAATTATCAATATTCTCATGACGATGCCAAAACTGATTACCATTGAGGTTAGCGAATCGAGTTTGAAGAAGGAGGGTGAACAAAAATTGAGCACAATGGTATCTTCAAACATAGAATATCTTTTTTTCCCTCGCTGCAACCTGTCGGACGAATTTCTTCCACTATGTCTCACGTGGTTTCCTAATGTGAAAAAGTTACATCTATCGGACTGTAATTTAACAATTGTTCCTGAATGCATCAAAGAATGTCATTTTCTATGGTCGCTTAACTTGGATGATTGCGAGCATCTTGAAGAAATTAGAGGGATTCCACCAAACATAAAAGATTTCTCTGCACTGAACTGCAAATCCCTGATGTCCTCGAGTAGAAGCATGTTATTAAATCAGGAACTCCATAAGGATGGAAATACCCGCTGCTTTATTTTGCCAGGACTAAGAATTCCAGAGTGGTTCACGCACAGAAGTAGTGGGCAGTCAATTTCTTTTTGGTTTCCTAATAAATTCCCTGCCATAGCTCTCTGCCTTGTTAGTCAACTGATGCATAAAAGGGAACACATTGGGTATTTTGATCAAATTAAAGTCACTCTGACCATCAATGGCTGTGAACATTATAATATGGAGTTCTCTTGCATGTTTCCAGATCATACAAATCTTGTTGATTTTCAGAATCTTATATCTGAGAATATAGCAGTTTCAGAGAATAAATGGAACCATGTGGAGGTTACATTTAAGGATCGGGACAATGTCCCAATCCATGTAGAAAGTGGAATCTGTGTATGGGAAAAGAAATGTAACATGGAGGATGTTCGATTCACTGATCCTTGTAGGAAAAGAAAATTAGAGGATGATCTCAACAGATTAGAATCACAAAACCACCTGTTGCTGAAAAAGCATAGATTAGAGGACATTCAAGTTTCTCAAACACAATTTGTGGAGCAGCTGCAACATACTGCATTATTATCACTGCAACAACTAGTGTCAATGGTATTAAGGCGGATAAGGGGCACCGCTAGTGTCAAAGGTAAATTCACCTTTGGTGTGCTATCACAGTAA 3384 0.3821 MENQSSSNKNETLPIQTTFKTSSSSSFTYRFTYDVFLSFRGTDTRHGFTGNLSKALCEKGIHTFIDDEKLQRGHEITPSLLKAIEESRIAIIVLSENYASSSFCLDELSKIIDCIKGNGRLVLPVFYNVDPSDVRKQKGTFSLHKKNFNGNMDRLLKWKTALQQVANLSGWHFKLGDEYEHEFIAKIVKEVSNKINRVPLHVAEYPVGLESQVIRVNLLLDVASDDKVHMVGIYGIGGMGKTTLAGAVYNSIADKFEGLCFLDDVRENSNKKGLVHLQEMLLSKVLGEKDIKIGSVREGISIIKHRLQQKKVLLILDDVDKLKQLQVMAGELDWFGPGSRVIITTRDRHLLIGHGIDKTYEMHGLNEKEALELFTRNVAYASGLPLALEVIGSNLCGKDIEIWKSTLDRYKRIPPEDIQKILKVSYDGLEEEVQSVFLDIACCFKGCYLEEVQNMLHSHYGYCIGYHIGVLVEKSLIKTSPDLCNSTVTLHDLIEDMGKEIVRQESPEQPGERSRLWFTKDIVQVLEDNTVSLKCIVIDLYFLCSKGTRKIQMISMDSPLVEEVEWDGYAFKKMENLKTLIIRKGCFSEGPNHLPNSLRVLEWQRYPLQYLPSDFHAKKLITCKLPNSSFTSFKFAGLLEKASQFVNLKNLNFDQCEDLRELPDVSALKNLEKFSFQDCKNLTRVHHSVGSLDKLKTLSANGCSRLRSFPPIKLTSLEQLYLSHCDSLESFPEVSEKMENIRDISLTGTPLKGLPFSFRNFTRLQRLGLSECGMFSLPIINILMTMPKLITIEVSESSLKKEGEQKLSTMVSSNIEYLFFPRCNLSDEFLPLCLTWFPNVKKLHLSDCNLTIVPECIKECHFLWSLNLDDCEHLEEIRGIPPNIKDFSALNCKSLMSSSRSMLLNQELHKDGNTRCFILPGLRIPEWFTHRSSGQSISFWFPNKFPAIALCLVSQLMHKREHIGYFDQIKVTLTINGCEHYNMEFSCMFPDHTNLVDFQNLISENIAVSENKWNHVEVTFKDRDNVPIHVESGICVWEKKCNMEDVRFTDPCRKRKLEDDLNRLESQNHLLLKKHRLEDIQVSQTQFVEQLQHTALLSLQQLVSMVLRRIRGTASVKGKFTFGVLSQ. 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05642 1127 PRINTS Disease resistance protein signature 381 395 - -
Seca9g05642 1127 PRINTS Disease resistance protein signature 306 320 - -
Seca9g05642 1127 PRINTS Disease resistance protein signature 712 728 - -
Seca9g05642 1127 PRINTS Disease resistance protein signature 230 245 - -
Seca9g05642 1127 Pfam NB-ARC domain 216 379 IPR002182 GO:0043531
Seca9g05642 1127 Coils Coil 1054 1074 - -
Seca9g05642 1127 SMART till_3 32 168 IPR000157 GO:0007165
Seca9g05642 1127 Gene3D Ribonuclease Inhibitor 560 736 IPR032675 -
Seca9g05642 1127 Gene3D - 361 430 IPR042197 -
Seca9g05642 1127 Pfam TIR domain 33 197 IPR000157 GO:0007165
Seca9g05642 1127 SUPERFAMILY L domain-like 565 928 - -
Seca9g05642 1127 SMART AAA_5 227 366 IPR003593 GO:0016887
Seca9g05642 1127 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 171 IPR035897 -
Seca9g05642 1127 ProSiteProfiles TIR domain profile. 31 195 IPR000157 GO:0007165
Seca9g05642 1127 Gene3D - 196 355 IPR027417 -
Seca9g05642 1127 Pfam C-JID domain 919 1034 IPR045344 -
Seca9g05642 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 440 IPR027417 -
Seca9g05642 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 740 IPR044974 GO:0006952
Seca9g05642 1127 Gene3D - 31 195 IPR035897 -
Seca9g05642 1127 FunFam Disease resistance protein (TIR-NBS-LRR class) 30 197 - -
Seca9g05642 1127 SUPERFAMILY "Winged helix" DNA-binding domain 417 527 IPR036390 -
Seca9g05642 1127 Gene3D Ribonuclease Inhibitor 737 916 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05642 Seca-Chr9 165869046 165872966 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05642 16 769 WRKY Transcription Factor Family AT4G12020 30.113 1.26e-79 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05642 - - gmx:100780257 1142.1