Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05638 ATGGCTCTACCACCACCATCATCCTCTTCATCATTTTCCTATGGATTCACCTATGATGTGTTCCTTAGCTTTAGAGGCACTGATACACGTCACGGTTTTACAGGCAATCTTTGGAAAGCTCTTCATGACAAGGGAATACACACCTTCATTGATGATGAGGAGCTTCAGAGAGGGGAGGAAATCACACGGGCACTTGTCAAGGCCATTGAAGAGTCCAGGATTGCCATCCTTGTATTCTCTAACAACTATGCCTTTTCTTTGTTTTGCTTAGACGGACTTGTCAACATCATTGAGCGCGTCATGGCAAAGGGTCGGTTGGTTTTGCCAGTCTTCTATGATGTGGATCCTTCTCATGTGCGCCATCAGACAGGGAGTTATGGAGAAGCACTGTCTAAGCACAAGGAAAAGTTCAAGGATAACATGGAAAGGTTGCAGAAATGGAAGATGGCTCTTAGTCAAGTAGCTAACTTGTCTGGGGAGCATTTTAAATTCGGGAATGAATATGAACATGAGTTTATAGGGAAGATAGTTAAAGAAGTTTCCAACAAGATTAATCGCATTCCTTTACACGTTGCGGATTATCCTGTTGGACTGGAGTCTCGAGTGCTTGAAGTAAAGTCACTTTTGGATGTTGGATCTAGTGATGGAGTCTACATGGTTGGGGTGTATGGAATTGGCGGAATGGGTAAAACAACACTTGCTCAAGCACTTTATAATTTCATTGCTGACCAATTTGAATGTTTATTTTTTCTTCATAATGTGAGAGAAAATTCAATGAGACATGGCCTAGAACATCTCCAACAGAAGCTCCTTTCTAAAACAGTTGGATTGAATATTAAGTTAGGAGATGCCAATGAAGGAATTCCAATAATAAAGCAAAGGTTACATCGAAAGAAGGTACTTTTGGTTCTTGATGATGTTGACAAACTAAAGCAAATGCAAGCCATGGTTGGAGGACCTGATTGGTTTGGTCCTGGTAGTAGAGTCATCATTACCACAAAGGACAAACATTTGCTAGCAAGTCATGGGGTTGAAAGAACGTATGAGGTAGTTGGCCTAAATGAGAAAGAAGCTCTTGAATTGTTAAGGTGGAATGCTTTTAAAAATAACAAAGTTGATCCAAGTTACAAGGATATATTAAAATGTATAGTGACTTATGCTTCTGGGCTTCCACTGGCTTTGCTCGTAATAGGTTCCAACTTGTTTGGAAAAAGCATAGAAGAATGGAAATCTGCATTAGCTAAGTATGAAAGGGTTCCTAATAAAGAGATCCAAAATACACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGATGAGCAAAGTGTCTTTCTGGACATTGCTTGTTGTTTCAAAGGATATGCATTGGCAAAGGTCAAAGATATACTTCATGCTCATTATGGTGTCTGCATGAAATATCACATTGCAATGTTGGTTGAAAAATCTCTCATTAAGATTGGTTGGGATAATACAGTAACACTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTTCGACAAGAATCCCCAAAAGATCCTGGGAAACGCAGTAGGTTGTGGTTCCCTAAAGACATACTTCAAGTTTTAAATGGAAATAATGGAACGAGTGAAATTGAAATCATACATCTTGATTTCCTGTTATGTGAAGAAGACTTGATAGAATGGAATGGAAAGGCCTTCAAGAAGATGAAAAATCTCAAAACACTTATTATTAGAAGTGGTCATTTTTCTAAAGGTCCCAAACATCTTCCAAATAGTTTAAGAGTTCTAGAGTGGTGGACATATCCTTCATGTCATTTACCATCTAATTTTCATCCAAAGAACCTTGCTATATTCAAGTTACCCTATAGTTGCTTTACATCATTTGAGTGGGCTGGCTTAGTGAATAAGGCAAGTGTAATGAATTCATATAAGTTCATGAATATCAGAGTTTTAAATTTTGACCGCTGTGAATATTTAACACAGATACCTGACCTATCTGGTCTATCAAATTTAGAAGAATTTTCATTTCAATTTTGTAAGAATGTAATTACAGTTCATGATTCGGTTGGGTTTTTGGATAAACTTAAAATCTTGAGTGCTAATGGTTGCAACAAACTAAGGAGTTTTCCACCCCTCAAGTTGGCTTCTCTTAGACAACTCAAACTTTCATATTGTGATAGTCTTGAGAGTTTTCCTGAAATATTAGTAAAGATGGAAAATATTACACAACTTAACTTGGAAGCAAGGCACTTGAAAGCATTGCCATTTTCATTTCAAAACCTTAGTCGACTTCAATATTTATATTTGCATAGCTATGAAACTGTTCAGTTACCAAGTAGCATTGCTATGATGCCAGAGCTGGCTTTGATTTCTGTCAAGGCAGGGGATGGGGGCCTATCTGAAGAAAAAGTAAGCTCGATGCTGTCTTCAAATGTAGAATATCTTCGCTTCTCATTCTACAACCTGTCAGATGAAGTGTTTCCAATAGATCTCACATGGTTTGCTAATGTGAAAGAATTAGACCTGCCCTGTAACAATTTTAAAATTGTTCCTGAATGTATTAAAGAATGCCGCTTTTTATGGAGGCTTTGTTTGGATAATTGCTCGAGACTTCAAGAAATTAGAGGGATTCCACCAAGCATAAAAAATTTCTCTGCATTAAACTGTGAATCCATGACTTCCGCATGTATAAGCATGTTACTGAATCAGGAACTTCATGAGGCTGGAAACACCAGGTTTCGTTTGCCACGAGCAAGGATTCCAAAGTGGTTCGAGCACCAGAACAGGGAACAGTCAATTTCTTTCTGGTTTCGTAACAACTTTCCTGCCTTAGCTCTATGTGTTGTTTCTCCACCAATATGGAGGGTCTCTCATCTGATGGTGATCATCAATGGCAAGAAAAATTTCTTTTCTACAGATCACGATTATGAATTTCTTTTGGCGAGATCAGATCATACACATCTTTTTCATATGCTAAAGGAAAAATTCAATGATAATCCGGATAAACCATTTTTAGAAAATGAATGGAACCATGCAGAGCTTGTGACAGACTTTATTGAAAGTGGAATCCATGTATTGAAAGAGAAAATAAGCATTGAGGATATTCGATTTACTGATCCTTTTAGAAAGAGAAAATTAGACTTGAATCCAGAGAAAAATATTCAGCTTACTCTTTGCCCACAAAGATAA 3171 0.3759 MALPPPSSSSSFSYGFTYDVFLSFRGTDTRHGFTGNLWKALHDKGIHTFIDDEELQRGEEITRALVKAIEESRIAILVFSNNYAFSLFCLDGLVNIIERVMAKGRLVLPVFYDVDPSHVRHQTGSYGEALSKHKEKFKDNMERLQKWKMALSQVANLSGEHFKFGNEYEHEFIGKIVKEVSNKINRIPLHVADYPVGLESRVLEVKSLLDVGSSDGVYMVGVYGIGGMGKTTLAQALYNFIADQFECLFFLHNVRENSMRHGLEHLQQKLLSKTVGLNIKLGDANEGIPIIKQRLHRKKVLLVLDDVDKLKQMQAMVGGPDWFGPGSRVIITTKDKHLLASHGVERTYEVVGLNEKEALELLRWNAFKNNKVDPSYKDILKCIVTYASGLPLALLVIGSNLFGKSIEEWKSALAKYERVPNKEIQNTLKVSFDALEEDEQSVFLDIACCFKGYALAKVKDILHAHYGVCMKYHIAMLVEKSLIKIGWDNTVTLHDLIEDMGKEIVRQESPKDPGKRSRLWFPKDILQVLNGNNGTSEIEIIHLDFLLCEEDLIEWNGKAFKKMKNLKTLIIRSGHFSKGPKHLPNSLRVLEWWTYPSCHLPSNFHPKNLAIFKLPYSCFTSFEWAGLVNKASVMNSYKFMNIRVLNFDRCEYLTQIPDLSGLSNLEEFSFQFCKNVITVHDSVGFLDKLKILSANGCNKLRSFPPLKLASLRQLKLSYCDSLESFPEILVKMENITQLNLEARHLKALPFSFQNLSRLQYLYLHSYETVQLPSSIAMMPELALISVKAGDGGLSEEKVSSMLSSNVEYLRFSFYNLSDEVFPIDLTWFANVKELDLPCNNFKIVPECIKECRFLWRLCLDNCSRLQEIRGIPPSIKNFSALNCESMTSACISMLLNQELHEAGNTRFRLPRARIPKWFEHQNREQSISFWFRNNFPALALCVVSPPIWRVSHLMVIINGKKNFFSTDHDYEFLLARSDHTHLFHMLKEKFNDNPDKPFLENEWNHAELVTDFIESGIHVLKEKISIEDIRFTDPFRKRKLDLNPEKNIQLTLCPQR. 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05638 1056 Gene3D - 16 185 IPR035897 -
Seca9g05638 1056 PRINTS Disease resistance protein signature 387 401 - -
Seca9g05638 1056 PRINTS Disease resistance protein signature 294 308 - -
Seca9g05638 1056 PRINTS Disease resistance protein signature 706 722 - -
Seca9g05638 1056 PRINTS Disease resistance protein signature 219 234 - -
Seca9g05638 1056 Pfam TIR domain 18 186 IPR000157 GO:0007165
Seca9g05638 1056 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 871 IPR044974 GO:0006952
Seca9g05638 1056 Gene3D Ribonuclease Inhibitor 725 901 IPR032675 -
Seca9g05638 1056 SMART till_3 17 157 IPR000157 GO:0007165
Seca9g05638 1056 SUPERFAMILY L domain-like 506 901 - -
Seca9g05638 1056 Pfam C-JID domain 909 984 IPR045344 -
Seca9g05638 1056 Gene3D - 186 348 IPR027417 -
Seca9g05638 1056 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Seca9g05638 1056 Gene3D - 352 436 IPR042197 -
Seca9g05638 1056 Gene3D Ribonuclease Inhibitor 529 724 IPR032675 -
Seca9g05638 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 446 IPR027417 -
Seca9g05638 1056 Pfam NB-ARC domain 202 429 IPR002182 GO:0043531
Seca9g05638 1056 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Seca9g05638 1056 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 186 - -
Seca9g05638 1056 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05638 Seca-Chr9 165790139 165794176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05638 12 834 WRKY Transcription Factor Family AT4G12020 29.398 1.89e-81 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05638 - - gmx:100814962 1229.54