Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05637 ATGGCTCTGTCACTTTCTTCCTCCTCTCCTTCCTTCACCTATGATGTATTCCTTAGCTTTAGAGGCACTGATACTCGCCATGGTTTTACTGGCAATCTCTCGAAAGCACTTCGTGAAAAGGGAATCCACACATTCATTGATGATGAGGAACTTGAGAGAGGAAATGAAATCACACCATCACTTCTCAAAGCTATTGAAGACTCCAGAATTGCCATCATTGTGCTCTCTGAGAATTATGCATCTTCATCTTTTTGCTTAGATGAACTTTCAAAGATCCTTGATTGCATCAAGGGAAAGGGTCGATCAATTTTACCGGTTTTTTATAACGTGGATCCTTCTGATGTGCGAAAGCAGAAGGGGACTTTTGGAGAGGCAATGACCATGCATAAAAAGAGGTTCAATGATAACAAGTTGAAGAATTGGAAGACAGCCATGGAGCAAGTAGCTAACTTGTCTGGTTGGCATTTTAAACTTGGGAATGAATATGAACATGAGTTCATTGCGAAGATTGTTAAAGAGGTCTCCAGCAAGATTAATCATGTTCCTTTACATGTTGCGAATTACCCAGTTGGATTGGAATCTCAAGTAGCACAAGTGAACTTGCTTTTGGATGTTGCATATGATGATAGAGTCCACATAGTAGGGATCTATGGAATTGGAGGAATGGGTAAAACAACTCTTGCTCGAGCCGTTTATAATTCTATTGCTGATCATTTTGAAGGCTTATGTTTTCTTGATGATGTGAGAGAAACTTCAAATAAAAATGGATTGGTACGTCTCCAAGAGATGCTTCTTTCTGAGGTACTTAGAGAGAAGGATATTAAGATTGGAAGTGTTAGTAAAGGAATTTCAATAATAAAGCACAGGCTGCAGCAAAAGAAGGTTCTTTTGATTTTGGATGATGTTGATGAATTGAAGCAATTGCAGGGTATGGTTGGAGGACTTGATTGGTTTGGTCCTGGGAGCAGAGTAATCATTACCACTCGGGACCGACATTTGCTTGTAGGACACGGGGTTGACAAAACCTATGAGGTACATGGGTTAAATGAGAAAGATGCTCTTGATTTGTTTATGAGGAATGCTTTTAAAAGTAACAAAGTTGATCCAAGCTACAAGGAAATTTCAAACCGTGCAGTGACTTATGCTTCTGGCCTTCCATTAGCTTTGGAAGTAATAAGTTCCAACTTGTGTGGAAAAGACATAGAAGTATGGAAATCTACATTAGATCGGTATATCCAAAAGATACTAAAAGTAAGCTATGATGGTCTGGACGAAGATGTGCAGAGTGTTTTCCTTGACATTGCATGTTGTTTCAAGAGATGTTATTTGAAAGAGGTCCAAAATATGCTTCATGCTCATTATGGTTATTGCATAGAATATCATATTGGAGTGTTGGTTGAAAAATCTCTCATAAAGACTAGTCCTGATCTTTATGATCATGTGACACTGCATGATTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAATCACCGAAAGAGCCTGGGAAACGTAGTAGATTATGGTTCACTAAAGATATAGTTCAAGTTTTGGAAGACAATACGGTCAGTAAGATTGATTTGAATGGTTTGGTGTTTTCATGTCTTAAATGTATTGTGGTTGATTTGTACTTTTTATGTTCAAAGGGCACAGGTAAAATTCAAATGATATCTATGGATTTCCCCTTGGATGAAAAAGTAGAATGGGATGCATATGCCTTTAAGAAGATGGAAAACCTCAAAACACTTGTTATCAGAAAAGGTCATTTTTCCAAAGGCCCCAAACATCTTCCAAATAGTTTGAGAGTACTGGAATGGAAGGGATGTCCTTTACAGTATTTTCCATTTGATTTTCATGCAAAGAAACTTACCATATGCAACTTGCCCTTTAGCTGCTTCACGTCATTCAAGTTCTTGCAGCAATTCGTGGATTTGAAAGATCTGAATTTTGACCATTGTCATAATTTAAAAAAGATACCTGATGTATCCGCTCTGAAAAATTTAGAAAATTTCTCATTTCAATATTGTGAGAACTTAACTAGAATTCATCATTCGGTTGGGTCACTGGATAAACTAAAAGTCTTGAGTGCTTCTGGTTGCAGCAGGCTTAGGAGTTTTCCACCCATCAAGTTAACCTCTCTTGAGGAACTGTACCTTTCATATTGTGATAGTCTTGAGAGTTTTCCAGAGGTATTAGAAAAGATGGAAAATATAACAAGTATTTTGTTGGCAGGCACTCCCATAAAAGAATTGCCTTTATCATTTCGAAATTTTACTCGGCTTCAGGAATTACGACTGGAGGAATGTGGAATGGTTAGTTTACCAAGTAGCATTCTCATGATGCCAGAGTTGACTCGCTTTGAGGTTTGTGATTCGAGTGGGTTCCTGTTGACAGAACAAAAATTGAGCACAATGGTATTTTCAAACATAGAAGTACTTAATCTCTGTTTCTGCAACCTGTCGGATGAATTTCTTCCATTATGTCTCACGTGGTTTGCTAATGTGAAAGAGTTAAATCTATCGGGCAATAATTTTACAACCATTCCTGAATGTATCAAAGAATGTCAATTTTTATGGTGGCTTAGTTTGGATTATTGCGAGCATCTTGAAGAAATTAGAGGGATTCCACCAAACATAAAATATTTCTCTGTAAGGGACTGCAAATCCCTCACTTCCTCGAGTAGAAGCATGTTATTGAATCAGGATTGCTTGAGTACATTTGATTTCTCTGAGGTATTCTCTGTATTTGATTGA 2757 0.3769 MALSLSSSSPSFTYDVFLSFRGTDTRHGFTGNLSKALREKGIHTFIDDEELERGNEITPSLLKAIEDSRIAIIVLSENYASSSFCLDELSKILDCIKGKGRSILPVFYNVDPSDVRKQKGTFGEAMTMHKKRFNDNKLKNWKTAMEQVANLSGWHFKLGNEYEHEFIAKIVKEVSSKINHVPLHVANYPVGLESQVAQVNLLLDVAYDDRVHIVGIYGIGGMGKTTLARAVYNSIADHFEGLCFLDDVRETSNKNGLVRLQEMLLSEVLREKDIKIGSVSKGISIIKHRLQQKKVLLILDDVDELKQLQGMVGGLDWFGPGSRVIITTRDRHLLVGHGVDKTYEVHGLNEKDALDLFMRNAFKSNKVDPSYKEISNRAVTYASGLPLALEVISSNLCGKDIEVWKSTLDRYIQKILKVSYDGLDEDVQSVFLDIACCFKRCYLKEVQNMLHAHYGYCIEYHIGVLVEKSLIKTSPDLYDHVTLHDLIEDMGKEIVRQESPKEPGKRSRLWFTKDIVQVLEDNTVSKIDLNGLVFSCLKCIVVDLYFLCSKGTGKIQMISMDFPLDEKVEWDAYAFKKMENLKTLVIRKGHFSKGPKHLPNSLRVLEWKGCPLQYFPFDFHAKKLTICNLPFSCFTSFKFLQQFVDLKDLNFDHCHNLKKIPDVSALKNLENFSFQYCENLTRIHHSVGSLDKLKVLSASGCSRLRSFPPIKLTSLEELYLSYCDSLESFPEVLEKMENITSILLAGTPIKELPLSFRNFTRLQELRLEECGMVSLPSSILMMPELTRFEVCDSSGFLLTEQKLSTMVFSNIEVLNLCFCNLSDEFLPLCLTWFANVKELNLSGNNFTTIPECIKECQFLWWLSLDYCEHLEEIRGIPPNIKYFSVRDCKSLTSSSRSMLLNQDCLSTFDFSEVFSVFD. 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05637 918 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Seca9g05637 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 773 IPR044974 GO:0006952
Seca9g05637 918 Pfam BspA type Leucine rich repeat region (6 copies) 634 739 IPR026906 -
Seca9g05637 918 Pfam NB-ARC domain 197 417 IPR002182 GO:0043531
Seca9g05637 918 Gene3D - 178 341 IPR027417 -
Seca9g05637 918 ProSiteProfiles Leucine-rich repeat profile. 835 856 IPR001611 GO:0005515
Seca9g05637 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 434 IPR027417 -
Seca9g05637 918 PRINTS Disease resistance protein signature 382 396 - -
Seca9g05637 918 PRINTS Disease resistance protein signature 688 704 - -
Seca9g05637 918 PRINTS Disease resistance protein signature 213 228 - -
Seca9g05637 918 PRINTS Disease resistance protein signature 289 303 - -
Seca9g05637 918 SMART AAA_5 210 348 IPR003593 GO:0016887
Seca9g05637 918 SMART till_3 13 151 IPR000157 GO:0007165
Seca9g05637 918 SUPERFAMILY L domain-like 560 909 - -
Seca9g05637 918 Pfam TIR domain 14 181 IPR000157 GO:0007165
Seca9g05637 918 SUPERFAMILY "Winged helix" DNA-binding domain 412 520 IPR036390 -
Seca9g05637 918 Gene3D - 11 177 IPR035897 -
Seca9g05637 918 Gene3D Ribonuclease Inhibitor 728 915 IPR032675 -
Seca9g05637 918 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 180 - -
Seca9g05637 918 Gene3D Ribonuclease Inhibitor 519 727 IPR032675 -
Seca9g05637 918 Gene3D - 347 424 IPR042197 -
Seca9g05637 918 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05637 Seca-Chr9 165769903 165778942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05637 9 839 WRKY Transcription Factor Family AT4G12020 29.758 8.47e-82 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05637 - - gmx:100814962 1078.93