Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05636 ATGCACGAATCTTCGTGGAAATATCCCATCCCTTCGCTTCGCCTAGTCTTTTGTTCTTCTAATCAGTTACCTTTTCCACTTCTTCATCTTGAATTCCCAACGACAACCGGAATCCGCACCTTCCTTGATGATAAGGAACTCGACAGAGGGAACGAGATCTCAGCAGCACTTGTCAAGGCCATTGAAGAGTCTCGAATTGCCATCACTGTGCTATCTAACAACTACGCCTCTTCTTCGTTTTGCTTAGATGAACTTGTCAACATCATTGAGCGCGTCAAGGCAAAGGATCGGTTGGTTTTGCCGATTTTGTCTGGCATGCATATCAAACTTGGAAATGCTTGTTTACATGTTGCTGATTTCCCTGTTGGATTGAAGTCTCAAATACAAAAAGTAAAGTTGCTTCTGGAGGATGTTGGATCTGAAGATGAAGTCCACATGGTAGGGGTCTATGGAATTGGCGGAATAGTTAAATATGGCTTGGTACATCTCCAAGAGAAGCTCCTTTCTAAAACAGCTGGATTGATGGTTAAGTTAGGAGATGTCAATGAAGGAATTCCAATAATAAAGCAAAGACTGAGTGGAAAGAAGGTTCTTTTAATTTTGGATGATGTCGATGAACTGAAGCAGTTGCAGGTTTTGGTTGGAGGACCTGATTGGTTTAGTCCTAGCAGCAGAGTAATCATTACCACTCGGGACCAACGTTTGCTAGCAAGACATGGGGTAACAAGAACATATGAGGTAGATGGGCTAAATATGAAGGAATCTCTTGAATTGTTTAGGTGGAATGCTTTTAAAAATAACAAAGTTGATCCATGTTATGAGGACATTTTAAAACGTGCAATAACTTATGCTTCTGGCCTTCCGTTGGCTTTGGAGGTAATAGGATCCAACTTGTTTGGAAAAAGTTTTGAAGAATGGGAATCTGCACTAGATCAGTATGAAAGGGTTCCTAATAAAGAGATCCAAAAGATACTTAAAGTAAGCTTTGATACTTTGGAGGAAGAAGAGCAGAGTGTTTTTCTTGACATTGCATGTTGCTTCAAAGGATATGTGTTGGCAGAGGTCGAATATATACTCAATGCTCATCATGGAAACTACATGAAACATCACATCAGAGTGTTGGTTGAGAAATCTCTCATAAAGAAATTGTCCGACTGGAATCACCAACAGATCCTGGGAAGCGCAGGAACTAGTAAAATTGAAATCATTTACTTGGATTCCCCCTTTGAAGAAGTAGAATGGGATGGAGAAGCTTTCAAGAAGATGAAGAACCTTAAAACACTCATTATTAGAAATGGTCATTTTTCCGAAAATCCCAAATATCTTCCAAGGAGTTTGGGAGTACTAGAATGGCAGAGATACCCTTCAGACAGAGCATTTACCATCTACTTTTCATCCAAAGAAACTTGTTATGTTTGCACCAGGCTTAGGAGTTTTCCATCCATCAAGTTTACCTCTCTTGAACAACTCAAACTTTCATATTGTTATATGCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAACATAACAAACCTTGAGTTGGCGTTCACTTCCATAAAAGAATTTCCATTTTCATTTCAAAATCTTTCTCGCCTTCAATCGTTACAACTGTACTGTGGAATTCTTAGGTTACCAAGTAACATTCTTTTGATGCCAGAACTGGCTAGGATTACTAATTATCAATGGGGTGGGTGTCTCTTGCTAAAACAGAATGGGGTTGAAGAAAAACTGAACTCAGTGGTCTTTCCAAATGAAGAATATCTTGAGTTGTCATCTTGTGGCCTGACAGATGAATTTCTTCCTATAGTTCTCTCGCAGTATGCTAATCAATTCCATGAAGCTGAAACCACTGTCCTTCGTTTGCCACAAGCAAGAATTCCAGAGTGGTTCCAACACCAAAGTAGGAGACCATCCATTTCATTCTGGTTTCGTAACAAGTTCCCTGACATAACTCTCTGCTTTGTTTCTCATTATAAAGGCAAGGCATATATCATTAAAGTCACTTTGACAATCAATGGTCACAAACATGCTAGTAAAGGCTATTTGATGGAATGTTCAGTTTGCGCATTCTGTGTGTACCTGCTAATGAAGAAGAGATCAGAAGATGTGCAGGGGAGGACATTGGAACTTCTTGAGACACTGAAGAAGGTGAAGGGCCAAGCTCGTGTTCAGGCCCTCAAGGAGCTTCATCTACTGGTGGCTGTTCATGCCACTGCCCGCAAGGCATTGATTGAAGAAGGTGGAGTCTCTATGATGTCATCATTGCTTGGTCCTTTTACTTCCCATGTTGTTGGCTCTGAGGTTATTGGTGTTCTTGTGAGTTTGACCCTTGATTCTGAATCCAAAAAGAGTCTAATGCAGCCTGCGAAGCTTGCACCTGAGGAGTGCTCGTTGATTGCTGTGGAAGCAGGACTTGCTGCAAAGCTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATATTAAAACAACACTCTGCTGAGCTTTTGAAGCCGTGTAGTTTAAATTATTCGGATACAATCTTCATTTCCAAGTGCAAGCTTACTCTGCTTTGCTCCATGGCTTCATTTCATTGTATCTTCTTCCCCTTTGGATCTTTAGAGGCCTCCAATTTTTCATAA 2625 0.405 MHESSWKYPIPSLRLVFCSSNQLPFPLLHLEFPTTTGIRTFLDDKELDRGNEISAALVKAIEESRIAITVLSNNYASSSFCLDELVNIIERVKAKDRLVLPILSGMHIKLGNACLHVADFPVGLKSQIQKVKLLLEDVGSEDEVHMVGVYGIGGIVKYGLVHLQEKLLSKTAGLMVKLGDVNEGIPIIKQRLSGKKVLLILDDVDELKQLQVLVGGPDWFSPSSRVIITTRDQRLLARHGVTRTYEVDGLNMKESLELFRWNAFKNNKVDPCYEDILKRAITYASGLPLALEVIGSNLFGKSFEEWESALDQYERVPNKEIQKILKVSFDTLEEEEQSVFLDIACCFKGYVLAEVEYILNAHHGNYMKHHIRVLVEKSLIKKLSDWNHQQILGSAGTSKIEIIYLDSPFEEVEWDGEAFKKMKNLKTLIIRNGHFSENPKYLPRSLGVLEWQRYPSDRAFTIYFSSKETCYVCTRLRSFPSIKFTSLEQLKLSYCYMLESFPEILGKMENITNLELAFTSIKEFPFSFQNLSRLQSLQLYCGILRLPSNILLMPELARITNYQWGGCLLLKQNGVEEKLNSVVFPNEEYLELSSCGLTDEFLPIVLSQYANQFHEAETTVLRLPQARIPEWFQHQSRRPSISFWFRNKFPDITLCFVSHYKGKAYIIKVTLTINGHKHASKGYLMECSVCAFCVYLLMKKRSEDVQGRTLELLETLKKVKGQARVQALKELHLLVAVHATARKALIEEGGVSMMSSLLGPFTSHVVGSEVIGVLVSLTLDSESKKSLMQPAKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQHSAELLKPCSLNYSDTIFISKCKLTLLCSMASFHCIFFPFGSLEASNFS. 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05636 874 Gene3D - 156 242 IPR027417 -
Seca9g05636 874 Gene3D - 31 146 IPR035897 -
Seca9g05636 874 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 602 IPR044974 GO:0006952
Seca9g05636 874 Gene3D - 249 333 IPR042197 -
Seca9g05636 874 PRINTS Disease resistance protein signature 284 298 - -
Seca9g05636 874 PRINTS Disease resistance protein signature 482 498 - -
Seca9g05636 874 PRINTS Disease resistance protein signature 146 161 - -
Seca9g05636 874 SUPERFAMILY Toll/Interleukin receptor TIR domain 34 105 IPR035897 -
Seca9g05636 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 343 IPR027417 -
Seca9g05636 874 Pfam NB-ARC domain 188 331 IPR002182 GO:0043531
Seca9g05636 874 Pfam TIR domain 35 102 IPR000157 GO:0007165
Seca9g05636 874 Gene3D Ribonuclease Inhibitor 374 635 IPR032675 -
Seca9g05636 874 SMART till_3 10 141 IPR000157 GO:0007165
Seca9g05636 874 ProSiteProfiles TIR domain profile. 9 138 IPR000157 GO:0007165
Seca9g05636 874 SUPERFAMILY RNI-like 412 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05636 Seca-Chr9 165695000 165704320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05636 792 850 U-box Gene Family AT3G49810 83.051 5.79e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05636 - - gmx:100814962 475.707