Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05633 ATGAATAATTATATTAAGGAATACGTATACCACATGCACATGGAGAAGACGAGAGGGGTGAGAAAAGGCGCATGGACATATGAGGAAGACAACCTGCTCAAGGCTTGCATTAACAAGTATGGGGTAGGAAAATGGCATTTAGTTCCTGAAAAAGCAGGATTGAATAGGTGCCGGAAAAGTTGTAGATTAAGGTGGTTGAATTATTTAAATCCCAACATCAATAGAGGAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGTTACATAATCTCCTAGGGAACAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTACTGGCACGCACACTTGAGCAAGAAGAAGGTGACCTCTAACTATAACAAGGAAGACAAGAAAGAAAAAGATAAACCAATAAAGGAAACCATGAAATTGAAACCTCATGAAATTATAAAACCTCGACCACGGACATTTTCAAATAATTCACAATGGTTGAAGGGGAAACAGATTCTTTCAAATAATGATGGTGTTATGCCTCTAGTGGCTTCAAATGATGATAATGTTACTACAAAGTGTGACACACAAACAACTATGCTCCCACATGGTGATGCACAAGCATATCTTGGTAGTGCTCCACAATCTACAATGTGGTGGGAGAGTTTGTTGAACATCGATGACGACAATAATGTCGGCAATGAGAAAGTTGGTACATGCTCTTTATCAAGTGAGAACTCCATTTTGGAGTTTCCGAATGCGGGAAACTTCTTTACCCAAGGCCCCATTGGACAACTACTTCCGCAAATACGGAGGCAATATGGAGAACTGAAGGGTGCTAATTGGAGTCTCACTCAAGCTTGA 864 0.4062 MNNYIKEYVYHMHMEKTRGVRKGAWTYEEDNLLKACINKYGVGKWHLVPEKAGLNRCRKSCRLRWLNYLNPNINRGSFAEDEVDMILRLHNLLGNRWSLIAARLPGRTANDVKNYWHAHLSKKKVTSNYNKEDKKEKDKPIKETMKLKPHEIIKPRPRTFSNNSQWLKGKQILSNNDGVMPLVASNDDNVTTKCDTQTTMLPHGDAQAYLGSAPQSTMWWESLLNIDDDNNVGNEKVGTCSLSSENSILEFPNAGNFFTQGPIGQLLPQIRRQYGELKGANWSLTQA. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05633 287 CDD SANT 80 120 IPR001005 -
Seca9g05633 287 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Seca9g05633 287 CDD SANT 24 69 IPR001005 -
Seca9g05633 287 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 17 185 - -
Seca9g05633 287 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Seca9g05633 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Seca9g05633 287 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Seca9g05633 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Seca9g05633 287 FunFam Myb transcription factor 22 74 - -
Seca9g05633 287 Gene3D - 76 148 - -
Seca9g05633 287 Gene3D - 22 74 - -
Seca9g05633 287 SMART sant 21 71 IPR001005 -
Seca9g05633 287 SMART sant 74 122 IPR001005 -
Seca9g05633 287 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Seca9g05633 287 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05633 Seca-Chr9 165592513 165595838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05633 15 227 MYB Transcription Factor Family AT1G66370 49.767 4.09e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g05633 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05633 - K09422 tpra:123921946 280.026