Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05615 ATGTGTAGTAGAGGCCATTGGAGGCCATCTGAGGATGAGAAGCTTCGGGAGTTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTAGAGGAAGATCAGGGAAAAGTTGCAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAATAGAAATCCTTTCACAGAAGAAGAGGAAGAGCGTCTTCTAGCTTCTCACAGGATTCATGGTAATAGATGGGCTGTGATTGCAAGACACTTCCCTGGAAGGACTGATAACGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGGATTCGCCGAGAAAGGTACAAAGTTTATGCAAAAGGGTCTCCTCATCAGCCAATCTTTTCTCCAAACCCACAAGATCATCATCATCATCATGAGACAAACATTATTGAGGCAACAAATCTCCCTTCTTTGGTTGACAAGTATAGCTACCCTTGTGTCACATATAGCCCTTTCCAATTCCCCAAGAAGTTTCATTTTCAAGATCCAAGTTCTTGTTCCACAATGTTTCAAGAGAGGAGTACTCAATCAGTTGAGTTTTATGATTTTCTTCAAGTAAATACTGATTCCAATAAAAGTGAAGTGACAGACAATGCAAAAAGAGATGATGAGGAAGTTAATCAAGATGCTGTGGGACAGCGGAGGAACAAGGATAACGGCGTTCCATTCATTGATTTTTTGTCTACTGGAAGCTGCTAA 723 0.4177 MCSRGHWRPSEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKVYAKGSPHQPIFSPNPQDHHHHHETNIIEATNLPSLVDKYSYPCVTYSPFQFPKKFHFQDPSSCSTMFQERSTQSVEFYDFLQVNTDSNKSEVTDNAKRDDEEVNQDAVGQRRNKDNGVPFIDFLSTGSC. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05615 240 PANTHER MYB PROTEIN-RELATED 4 193 - -
Seca9g05615 240 Gene3D - 57 134 - -
Seca9g05615 240 FunFam MYB transcription factor 4 55 - -
Seca9g05615 240 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Seca9g05615 240 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Seca9g05615 240 Gene3D - 4 55 - -
Seca9g05615 240 SMART sant 55 103 IPR001005 -
Seca9g05615 240 SMART sant 3 52 IPR001005 -
Seca9g05615 240 Pfam Myb-like DNA-binding domain 7 67 - -
Seca9g05615 240 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Seca9g05615 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Seca9g05615 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Seca9g05615 240 CDD SANT 7 48 IPR001005 -
Seca9g05615 240 CDD SANT 58 101 IPR001005 -
Seca9g05615 240 MobiDBLite consensus disorder prediction 199 225 - -
Seca9g05615 240 MobiDBLite consensus disorder prediction 202 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05615 Seca-Chr9 164931603 164934659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05615 1 239 MYB Transcription Factor Family AT1G17950 56.972 2.01e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g05615 Myb_DNA-bind_6 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05615 K09422 - gmx:100811746 375.555