Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05608 ATGGTGATCACATCCACTGTCTCACACCCAGAAGAACAAGGACAGAGCTTATGCTCTACTTTTGCTTCCAGATATGTGCGTGAACCTGTTCCAAAGTTCAAGATGCCAGAGAGGTCTATACCAAAGGATGCTGCTTATCAGATAATAAACGATGAGTTGATGCTGGATGGGTTACCAAGGCTTAACTTGGCCTCGTTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATCATGGCTTCACTTAACAAGAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGGTGTGTTAATATAATAGCACATCTATACCATGCTCCAATTGGTGAAGATGAGACTGCAGTGGGTGTGGGAACGGTGGGATCATCAGAGGCAATAATGTTAGCAGGTCTGGCTTTTAAAAGGAAATGGCAGACAAAAAGGAAATCAGAAGGCAAACCATATGACAAGCCCAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTTGAGCTCAAGGAAGTGAAACTCACAGAGGGATGCTATGTGATGGACCCTGTGAAAGCAGTGGACTTGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAATGAACTTCTTACTAAAAAGAACAAGCAGGTTTGTTGGGAAAAATTTGCTAACTACTTTGAAGTTGAGCTCAAGGAGGTGAAACTCACAGAGAAATGCTTTGTGATGGACCCAGTGAAAGCAGTGGAATTGGTGGATGAGAACACAATATGTGTTGCAGCCATTTTGGGGTCAACTATGACAGGAGAGTTTGAGGATGTCAAGCTTCTCAATGAACTTCTTACAAAGAAGAACAAGGAGACAGGGTGGGATACCCCAATTCATGTTGATGCTGCAAGTGGAGGGTTTATTGCTCCATTTATCTACCCTGATCTTGAGTGGGATTTCCGTTTGCCATTAGTGAAGAGTATCAATGTCAGTGGTCACAAGTATGGCCTTGTATACCCTGGTGTTGGTTGGGTTGTCTGGAGGAACAAAGATGAGTTGCCAGATGAACTTATCTTTCACATCAACTATCTTGGATCAGATCAACCCACTTTCACTCTCAATTTCTCCAAAGGCTCTAGTCAAATCATTGCTCAATATTATCAGTTCTTAAGGCTTGGCTTTGAGGGTTATAAAAACATCATGAGCAATTGCTGGGAGAATACTAAAGTGCTGATAGAAGGAATAGAGAAAACAGGGCGGTTCAACATTATTTCCAAAGATGTAGGAGTGCCACTGGTAGCTTTCTCTCTGAAAGATAGCAGCAAATACACTGTGTTTCAAATATCAGAAGAGTTAAGAAAATATGGGTGGGTTGTTCCTGCCTACACCATGCCACCTGATGCTGAACACATTGCTGTTCTCCGAGTGGTGATCAGGGAGGATTTCAGTCGTGGCCTAGCAGACAGACTTGTTTCTGACATTGTTGAAGTCTTGAAGGTCTTGGACAAACTTCCAAGTACCAAAGCTGCTCAAGTCACAGTTGTCACTAATGAGAAAGGTGAGAAGCTTAAAAAGAGGGCATTGGAGATCCATCCAGAGATTGTTAGGTACTGGAAGAGGCTTAAGGATAGCAAGGCAGCTGGAGTATGCTAA 1701 0.435 MVITSTVSHPEEQGQSLCSTFASRYVREPVPKFKMPERSIPKDAAYQIINDELMLDGLPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIAHLYHAPIGEDETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVMDPVKAVDLVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKQVCWEKFANYFEVELKEVKLTEKCFVMDPVKAVELVDENTICVAAILGSTMTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRNKDELPDELIFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFLRLGFEGYKNIMSNCWENTKVLIEGIEKTGRFNIISKDVGVPLVAFSLKDSSKYTVFQISEELRKYGWVVPAYTMPPDAEHIAVLRVVIREDFSRGLADRLVSDIVEVLKVLDKLPSTKAAQVTVVTNEKGEKLKKRALEIHPEIVRYWKRLKDSKAAGVC. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05608 566 FunFam Glutamate decarboxylase 434 521 - -
Seca9g05608 566 Gene3D - 1 68 - -
Seca9g05608 566 FunFam Glutamate decarboxylase 69 236 - -
Seca9g05608 566 NCBIfam glutamate decarboxylase 230 517 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca9g05608 566 FunFam Glutamate decarboxylase 7 68 - -
Seca9g05608 566 FunFam Glutamate decarboxylase 237 433 - -
Seca9g05608 566 Pfam Pyridoxal-dependent decarboxylase conserved domain 232 454 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca9g05608 566 Gene3D - 234 433 IPR015421 GO:0003824
Seca9g05608 566 Gene3D - 434 521 - -
Seca9g05608 566 SUPERFAMILY PLP-dependent transferases 231 517 IPR015424 -
Seca9g05608 566 SUPERFAMILY PLP-dependent transferases 12 234 IPR015424 -
Seca9g05608 566 Gene3D - 69 233 IPR015421 GO:0003824
Seca9g05608 566 PANTHER GLUTAMATE DECARBOXYLASE 235 566 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05608 Seca-Chr9 164822577 164834327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05608 230 566 Calmodulin-binding Proteins AT3G17760 73.178 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05608 K01580 - gmx:100783047 561.992