Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05604 ATGGCTGAGTTTCAGAAAGATGAGGTGCCAATGCTATCAGATACTCATCCCAAACTATCAAATGAACCTGCTGATTCAAAATTCCAGAGACTTGTACCTAGGACACGAAGTGTATCAATTTCTATTCCCATGATCCCTCTGGAGCCATATGATATAAATACTAATCTTGTGGGACACACTGGTCCCCTAAAGAGTCAAAGAAAAACTCCATTTAATCAAATGAGCGGTCCATTATATATTACCCATAGACCTGGAAACCTTTTCTGGCAGAATATGGTAGCACCAGGGAACAAAGCAGTGGAAAGTAAGACAGAAAATTTTCCTTCATCCTGTGCCATGAGTGGAAATGATTTGCAGAACAACTATGCTGGTAAAAATGAACATTTAGTAAGGTCTGGTCAACTGGGAATGTGTAATGATCCATATTGTACAACTTGCCCAACTTACTTCAAGGCGACTCAACAAAGGGATTCAAAAGCTTCGGGTATATTCAATCCTAAGTTTCAGTTTCACAGTTCCCTTTATGGGGATGCCAAGGGTTGGGCAAGAAGACTTTTTGCTTTCTTGATTCCACATGTTCCTAGAGTTATGAATCCTCATACTAAACTTGTACAACAATGGAACAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTCTCTGTGCAGAAGGAAGATAAATGTATTGTTATAAACTCAACTTTGACAACAGTGCTTGTTTTACTTAGAAGCATGAATGATTTCATATACTTCCTAAACATTATTCTTCAGTTTAGGCTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCAGGGGAGTTAGTTGACCATCCTAAAAAAATAGCTCTTCACTATCTTCAGACATATTTTGCTTTTGACTTGTTTGTTGTACTTCCACTTCCTCAGTTGTCATGGTATAATTCTGTGAAATATTTGCAGATAACCATATTGTTTGTCCTACCAAAACACTTGGGATCATCAGGAGCAAACTATGCAAAGAATATTTTGCGTGCTGTGCTCCTTGTTCAGTATATTCCAAGATTGTGTAGATTTATCCCTATGCTAATATCTCCAACCGGATTCATATTTGAGTCAGCATGGGAAAGTTTCTTTATAAATCTTTTTATCTTTATGCTATCAGGCCATGTTGTTGGGTCATGGTGGTACCTCTTCGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCATGCAAGACATCACATATTGTTGGATGCTCAAAATTCATTGATTGTGGTCATGGAAATACCAGAGAATATCAAATTGATGCAAATTGGAACCAATGGAAGAACAATGCTAATGCAAGTGCTTGTTTTACTGAAGATGGTTTCGATTATGGGATCTATCTTAAAGCTGTCAACCTTACTGCAGATCATAATGTGGTCACTAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACTCTGGCTGGCAATTTAACTCCAAGCTATTTTGTTTGGGAAGTCCTTTTCACCAAGGCCATCATAGGAATGGGACTCTTGCTTTTTGCTCTTCTCATTGGGAACATACAGAACTTTCTTCAAGCTCTTGGGCGCAGGAGGCTAGAAATGTCACTTAGACAACGTGATGTTGAGCAATGGATGAGCCATAGGCGCCTAGCTGATGATCTGAGAAGGAGAGTGCGACAGGCTGAACGTTATAACTGGGCTGCAACAAGAGGGGTCAATGAAGAAATTCTCATGGAGAATTTGCCAGAAGATCTCCAGAGGGACATCAGACGTCATCTCTTTAAATTTGTTAAGAAAGTTCGAATTTTTGCCTTGATGGATGAGCCTATATTGGACGCCATCTGTGAGAGACTAAGACAAAAAATATACATCAAAGGAAGTGAAATTTTGTATGATGGTGGTCTGGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAATTGGAGAGCATTGGTGAAGATGGAATTAGAGTTCCTCTATCTGAAGGGAGTGTTTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATCCCTCAGGTAACAAAGATGGTGGAAAAGCAAGGATTCCAAGACAAAGGTTGGTTAGCAATAGGACAGTGTTGTGCTTAACGAATGTGGAGGCATTTTCCCTAAGAGCAGCAGATCTTGAAGAAGTTACAAGCCTTTTTGCAAGATTCTTGAGGAGTCCTTGTGTTCAAGGAGCCATAAGGTATGAATCACCTTACTGGAGATGCCTTGCAGCAATGCGTATACAGGTTGCATGGAGATACAGAAAGAAACGTCTTAGTCGTGCTGACACTTTACAATCAAATGATCAATGA 2346 0.3968 MAEFQKDEVPMLSDTHPKLSNEPADSKFQRLVPRTRSVSISIPMIPLEPYDINTNLVGHTGPLKSQRKTPFNQMSGPLYITHRPGNLFWQNMVAPGNKAVESKTENFPSSCAMSGNDLQNNYAGKNEHLVRSGQLGMCNDPYCTTCPTYFKATQQRDSKASGIFNPKFQFHSSLYGDAKGWARRLFAFLIPHVPRVMNPHTKLVQQWNKFFAICCLVAIFVDPLFFFLLSVQKEDKCIVINSTLTTVLVLLRSMNDFIYFLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTYFAFDLFVVLPLPQLSWYNSVKYLQITILFVLPKHLGSSGANYAKNILRAVLLVQYIPRLCRFIPMLISPTGFIFESAWESFFINLFIFMLSGHVVGSWWYLFGLQRVNQCLRNACKTSHIVGCSKFIDCGHGNTREYQIDANWNQWKNNANASACFTEDGFDYGIYLKAVNLTADHNVVTRYVYSSFWGFQQISTLAGNLTPSYFVWEVLFTKAIIGMGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLADDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFKFVKKVRIFALMDEPILDAICERLRQKIYIKGSEILYDGGLVEKMVFVVRGKLESIGEDGIRVPLSEGSVCGEELLTWCLEHPSGNKDGGKARIPRQRLVSNRTVLCLTNVEAFSLRAADLEEVTSLFARFLRSPCVQGAIRYESPYWRCLAAMRIQVAWRYRKKRLSRADTLQSNDQ. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05604 781 SUPERFAMILY Voltage-gated potassium channels 199 539 - -
Seca9g05604 781 Pfam Ion transport protein 207 539 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca9g05604 781 CDD CAP_ED 611 727 IPR000595 -
Seca9g05604 781 Gene3D Helix hairpin bin 539 603 - -
Seca9g05604 781 SUPERFAMILY cAMP-binding domain-like 539 735 IPR018490 -
Seca9g05604 781 Gene3D Jelly Rolls 609 733 IPR014710 -
Seca9g05604 781 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 772 - -
Seca9g05604 781 MobiDBLite consensus disorder prediction 1 23 - -
Seca9g05604 781 SMART cnmp_10 611 746 IPR000595 -
Seca9g05604 781 ProSiteProfiles cAMP/cGMP binding motif profile. 611 686 IPR000595 -
Seca9g05604 781 Gene3D - 208 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05604 Seca-Chr9 164692870 164704978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05604 5 689 Ion Channels AT3G17700 60.290 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05604 K05391 - gmx:100795955 1244.18