Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05603 ATGGCTAATTTTGAAAATGATGAGATGCCGATGCTGTCAAAAACAGATGCTCAACCATATGATGAACCTTTTGATTCTAAATTTCAAAGGCTTGTAACCAGGACACAAAGTGCATCAACAATTTCTGTTCCTATGAGTTCCTTGGAGTCATATGAGAGAGAAACTAGTCTTGCAGGACATACTGGTCCACTTCTGAGTAAGAGAAAAACACCCTTAATTCAGATGAGTGGTCCACTAAATGGTACCCTGGGAACTGGAAATCCTTTGCAGCAGCGTATTATTGGAACAGAAAACAAAGCAGAGGAGAGAAAGACAGAAAATTTTGCTGCTTTCCGCAGCACAGGTTCAAATTACTGGAATAATGACCATGACAGAAAAAATGAACACTTACTGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCTATTTACTTCAATGTTCCTCAGCAAAGAAATCCAAAACCATCAACTATATTTGATCCCAAGTTCCACAATGTTCTTTATGGGGATGCCAAGGGTTTTGCGAGAAAACTTTTCTCTTTCTGCTCTTCATATGTTCCTGGAGTTATGAACCCTCACGCTAAAATCGTACAACAATGGAACAAGTTTTCGGCCATTTTTTGTTTGATTTCTATTTTTGTGGATCCATTATTTTTTTTCTTACTCTATGTCCAGCAGGATTATAAATGTATCGTAATCAACTGGACTATGACAACAGCACTTGTTTTAATTAGAAGCATAAACGATCTTGTATATTTCTTTAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCAGAGTCTACAGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTGAGGCATTATTTCCTTATTGACTTATTTGTTGTATTTCCTTTTCCTCAGATAATGATATTGTATGTCCTGCCACATTCCTTTGGAGGAGCAAATGATGCTAAGAATCTTCTGCGTGCAGCAATCTTAATGCAGTATATTCCCAAGTTATTCAGGTTTCTGCCGCTGCTAATTGGCCAATCTCCGACCGGATTCATATTTGAGTCAGCTGGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTTGCTAGCCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGCCTACAGAGGGTTAATCAATGCTTGCGAGATGCCTGCCACAAGTCTAATATTACTGGATGCATGAAATTTATTGATTGTGGACATGACCTTAATGGAAACAATCAGCCTGACCTAAGATCAAGTCAATGGAACAACAATATAGATGCCATGAATTGTTTGAATCCCCCTTCTGAAGGTGGTTTTCCTTATGGGATCTATGATGCTGCTGTACCACTTACTACAGAAACAAACATGGCCAACAAATATGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTATAGCTGGTAATCAAGAGCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGTCCATCATGGGATTGGGACTCTTGCTTTTTGCGATTCTAATTGGAAACATACAGAACTTTCTGCAGTCTCTTGGACGGAGGAAGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGCCGCTTACCAGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTCATGGAGAATCTGCCAGAAGATCTGCAGAGAGATATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTATGCACTATAATATCTGTGAAGTAA 1824 0.3931 MANFENDEMPMLSKTDAQPYDEPFDSKFQRLVTRTQSASTISVPMSSLESYERETSLAGHTGPLLSKRKTPLIQMSGPLNGTLGTGNPLQQRIIGTENKAEERKTENFAAFRSTGSNYWNNDHDRKNEHLLRSGQLGMCNDPYCTTCPIYFNVPQQRNPKPSTIFDPKFHNVLYGDAKGFARKLFSFCSSYVPGVMNPHAKIVQQWNKFSAIFCLISIFVDPLFFFLLYVQQDYKCIVINWTMTTALVLIRSINDLVYFFNILLQFRLAYVSPESTVVGAGDLVDHPKKIALHYLRHYFLIDLFVVFPFPQIMILYVLPHSFGGANDAKNLLRAAILMQYIPKLFRFLPLLIGQSPTGFIFESAGANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRDACHKSNITGCMKFIDCGHDLNGNNQPDLRSSQWNNNIDAMNCLNPPSEGGFPYGIYDAAVPLTTETNMANKYVYSLFWGFQQISTIAGNQEPSYFVWEVLFTMSIMGLGLLLFAILIGNIQNFLQSLGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKVCTIISVK. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05603 607 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 139 600 - -
Seca9g05603 607 MobiDBLite consensus disorder prediction 1 21 - -
Seca9g05603 607 SUPERFAMILY Voltage-gated potassium channels 199 530 - -
Seca9g05603 607 Pfam Ion transport protein 206 530 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca9g05603 607 SUPERFAMILY cAMP-binding domain-like 530 595 IPR018490 -
Seca9g05603 607 Gene3D Helix hairpin bin 529 594 - -
Seca9g05603 607 Gene3D - 209 527 - -
Seca9g05603 607 PRINTS EAG/ELK/ERG potassium channel family signature 566 573 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca9g05603 607 PRINTS EAG/ELK/ERG potassium channel family signature 262 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca9g05603 607 PRINTS EAG/ELK/ERG potassium channel family signature 516 525 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca9g05603 607 PRINTS EAG/ELK/ERG potassium channel family signature 472 489 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca9g05603 607 PRINTS EAG/ELK/ERG potassium channel family signature 498 509 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05603 Seca-Chr9 164673528 164682691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05603 5 600 Ion Channels AT3G17700 59.008 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05603 K05391 - gmx:100795427 1010.75