Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05602 ATGGCTAATTTTGAAAACGGTGAGTTGGACATGCAATCAGAAACACATGCACAACCTTATGATGAACCGTTGGATTATAATTTCAGAAGGCTTGTATCAAGGACACAAAGTACTTCAATTTCAATTCCCATGATGGAGTCATATGAAAGAGGAACTAGTCTTGTAGGACATACTGGTCCACTTAGGAGTGAGAGAAAAATTCCCTTTAAGCAGATGAGTGGTCCACTATATGCTACACCAGGAACTGGAAATCTTTTGCAGCAGAGTATAGTTGTGACAGGAAATGAAGCAGAGGAGAGCAAGACAGAGAAATTTGCTACTTTCCGTGGCCCTGGTTCAATTTACTGGAAGGACAACTATGATGATAAAAATGAACATTTGATGAGGTCTGGGCGACTTGGAATGTGTAATGATCCTTATTGTACTATTTGTCCTACTTATTTCAAGGCTTCTCAGCCAGGAAATCCTAAAGCTTCCACTAAACTTGATCCCAAGGTGTTTTTTCACAATGCACTTTATGGGGATGCCAAGGGTTTTGTGAGAAAACTTTTTTCTTTCTGTTCTTCACATGTTCCTGGAGTTATGAATCCTCACACAAAATTCGTACAACAATGGAACAAGTTTTTAGCCATTTGTTGCTTTGTTGCAATTTTTGTGGATCCTTTATTTTTCTTTGTACTCTATGTAAAGCAGGATTTTAATTGTATTGTTATTAACTGGAGATTGACAATAGGACTTACTGTACTTAGAAGCATAAATGATCTTGTATATTTCTTTAACATTCTTCTCCAGTTTAGGTTGGCATATATTTCTCCTGAGTCTAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACTTGCAGGGTTATTTTCTTTTTGACTTATTTGTTGTACTTCCTCTTCCTCAGCTCTTCATGACATACATAGTGAAATATGTGCAGATAATAATATTGGTTGTCCTACCAAATTCCTTGGGGGGAGCAAATTATGCTAAGAATGTTCTGCGTGCAGTGATCCTAGTGCAGTATATTCCCAGGTTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTGTGCTATTTGGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTTCAGAGGGTTAATCAATGTTTGCGAGATGCGTGCCATAGTTCTAATATACCTGGATGCCTGAAATTCATTGATTGTGGACGTGGCGGCAATGAAAGCAATCAGCCTAGTTTGGCATCAGCTCAGTGGAACAACAATACAGATGCCAATAATTGTTTAAATCCCCCTTCTAGTGGTGGTTTTCCTTATGGGATCTATGCCACTGCTGTACCACTAACTACAGAAACAAACATGGTCAACAAATATGTGTATTCTCTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCAAGTCCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGGCCACCATAGGATTGGGACTCTTGCTTTTTGCACTTCTAATTGGAAACTTTCAGAACTTTCTTCAGTCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGACGCCGTGATGTTGAACGATGGATGAGCCATCGTCGGTTACCAGGTGACCTAAGAAGGAGAGTAAGACAAGCTGAACGGTATAATTGGTCTGCGACAAGGGGAGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGGCGTCATCTCTTCAAATTTGTTAAGAATATTCGAATTTTTTCCCTGATGGATGAGCCTATTTTAGATGCCATTTGTGAGAGACTAAGACAAAAGACATACATCAAGGGAAGTAGAATTTTGCGTCAGGGTGGTCTGGTAGAGCATATGATCTTTGTTGTGCGTGGGAAGTTGGAGAGCATTGGAGAAAATGGAACCAGAATTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCATTCTTCTGTAAGCACAGATGGAAGAAAAGTAAGGCTTCCAGGACAAAGGTTGCTAAGCAGCAGGACAGTAACCTGCTTAACAAATGTGGAGGCATTTTCACTCCATGCTGCAGACCTTGAAGAAGTCACAATTCTTTTCACAAGATTCTTGAGGAGTCCACGTGTTCAAGGAGCACTAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAACCCGCATTCAGGTTGCATGGAGATACAAGAAGAAATGTCTAAGTCGTGCTAATTCTTCACTGTCACATATTAAACATTGA 2352 0.4035 MANFENGELDMQSETHAQPYDEPLDYNFRRLVSRTQSTSISIPMMESYERGTSLVGHTGPLRSERKIPFKQMSGPLYATPGTGNLLQQSIVVTGNEAEESKTEKFATFRGPGSIYWKDNYDDKNEHLMRSGRLGMCNDPYCTICPTYFKASQPGNPKASTKLDPKVFFHNALYGDAKGFVRKLFSFCSSHVPGVMNPHTKFVQQWNKFLAICCFVAIFVDPLFFFVLYVKQDFNCIVINWRLTIGLTVLRSINDLVYFFNILLQFRLAYISPESRVVGAGDLVDHPKKIALHYLQGYFLFDLFVVLPLPQLFMTYIVKYVQIIILVVLPNSLGGANYAKNVLRAVILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFVLFGHVVGSCWYLFGLQRVNQCLRDACHSSNIPGCLKFIDCGRGGNESNQPSLASAQWNNNTDANNCLNPPSSGGFPYGIYATAVPLTTETNMVNKYVYSLFWGFQQISTLAGNQVPSYFVWEVLFTMATIGLGLLLFALLIGNFQNFLQSLGRRRLEMQLRRRDVERWMSHRRLPGDLRRRVRQAERYNWSATRGVNEEMLMENLPEDLQRDIRRHLFKFVKNIRIFSLMDEPILDAICERLRQKTYIKGSRILRQGGLVEHMIFVVRGKLESIGENGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSSRTVTCLTNVEAFSLHAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAATRIQVAWRYKKKCLSRANSSLSHIKH. 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05602 783 Gene3D - 207 537 - -
Seca9g05602 783 SUPERFAMILY cAMP-binding domain-like 540 729 IPR018490 -
Seca9g05602 783 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g05602 783 Pfam Ion transport protein 205 540 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca9g05602 783 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 170 772 - -
Seca9g05602 783 ProSiteProfiles cAMP/cGMP binding motif profile. 612 680 IPR000595 -
Seca9g05602 783 Gene3D Jelly Rolls 610 734 IPR014710 -
Seca9g05602 783 SUPERFAMILY Voltage-gated potassium channels 197 535 - -
Seca9g05602 783 CDD CAP_ED 612 728 IPR000595 -
Seca9g05602 783 SMART cnmp_10 612 747 IPR000595 -
Seca9g05602 783 Gene3D Helix hairpin bin 539 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05602 Seca-Chr9 164645054 164653251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05602 29 690 Ion Channels AT3G17700 58.806 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05602 K05391 - gmx:100795427 1219.14