Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g05601 | ATGGCTCTTCGATCCTCCTCCTCCTCCTCCACCTCCACCTTTGGATTCACCTACGATGTGTTTCTTAACTTCAGAGGTTCTGATACTCGTTATGGCTTCACCGGCAATCTGTGGAAAGCTTTATGTAATAGGGGAATCAACACCTTTATCGATGACGAAGAGCTTCAAAGCGGGGACGAAATCACACCAGCACTTGCCAAAGCCATTGAAGAGTCTCGGATTGCCATTCCGGTGTTCTCAACCAACTATGCTTCTTCTTCATTTTGCTTAGATGAGCTTGCCTACATCGTTGATTGCATTAAGGCAAAAGGTCGATTGGTTTTGCCGGTTTTCTATGATGTGGATCCTTCTCATGTGCGCCATCAAATTGGGAGTTACGGAGAAGCACTTGCTAAGCATGAGGAAAAGTTGAAGGATAACATGAAGAGAATGCAGAAATGGAAGATGGCTCTTAACCAAACCGCTAATTTATCTGGGTTGCATTTTAAAAATGAATATGAACACGAGTTTATTGGAAAGATAGTTGAAGTGGTCTCCAGCAAAATTAATCGTGCTCTTTTACATGTTGCGCATTACCCTGTTGGGTTGGAGTCTCGTGTGCTTAAAGTAATGTCACTTTTGGAGATTGGATCTGATGATGGAGTACACATGGTAGGAATTTATGGAATTGGTGGAATGGGTAAAACAATGCTTGCACGAGCAGTTTATAATTTGATTGCTGACCAATTTGAAGGTTTGTGTTTTCTTCATAATGTGAGGGAAAATTCAACTAAATATGGCTTAGAATATCTCCAAGAGAAGCTCCTTTCCAAAACAGTTGAATTGAATATTAAATTGGGAGATATTCATGAAGGAATTCCAATAATAAAGCACAGGCTACATCGAAAGAAGATTCTTTTGGTTCTTGATGATGTTGACAAACTAGAGCACTTGAAGGTTATGGTTGGAGAACCTAATTGGTTTGGTACTGGTAGTAGAGTCATTATTACCACTCGGGAGAAACATTTGCTAGCAACTCATGGTGTTGAGAAAACATATGAGGTAGATGAGTTGAATAAGAAAGAAGCTCTTGAATTGTTTAGGTGGAATGCTTTTAAAAATAACAAAGTTGATCCAAGTTATAAAGACATTTTAAAACGTGCAGTATCTTATGCTTATGGTCTTCCATTGGCTTTGGAAGTAATAGGGTCCAACTTGTTTGGAAAAGGAATAGAAGAATGGGAATCTGCATTGGATCGGTATGATAGGATTCCTAATAAAGAGATCCAAAAGATACTTAAAGTGAGCTTTGATGCTTTGGAGGAAGAAGAGCAAATAGTTTTTCTCGACATTGCATGTTTCTTCAAAGGATATCGATTAATAGAGCTTGAAGAAATACTTTATGCTCATCACGATAGCAACATGAAACATCACATTGGAGTGCTGGTTGAAAAATCCCTAATACAGATTAGTGAGTTATATCGTGTGATATTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAATCACCAAAAATGCCTGAAAAACGCAGTAGATTGTGGCTCGCTAAGGATATAGTTCCAATTTTAGAAGAAAATATGGGAACTCCTGAAACTGAAATCATATATATGGATTTCCCATTATTTGATGAAGAAATAGAATGGGATGGAGAGGCTTTCAAGCGGATGAAAAATCTTAAAACACTTATTATTAAAAATTGCCGCTTTTCCAAAAGTCCCAAATATCTTCCAAATGGTTTAAGAGTACTTGAATGGTGGGGTTATCCTTCAAATCATTTTCCACCTGATTTTCATCCAAAAAGACTTTCCATATGCAAGTTACCTGCTGGTTGCTATACATCATTGGAGTTGAGCGGGAAGTTCGTGAATATGAAAAATTTAAACTTGAATGACTGTAAATATTTAACGAAGCTCCCTGACGTATCTGGTCTTCCAAATTTAGAAAAGCTTTCATTTGAAGATTGTGAGAATTTAATTACAATTCACAATTCAGTAGGGTACTTGCATAAACTTAAAATCCTGAAAGCTAGGAGTTGA | 2049 | 0.3758 | MALRSSSSSSTSTFGFTYDVFLNFRGSDTRYGFTGNLWKALCNRGINTFIDDEELQSGDEITPALAKAIEESRIAIPVFSTNYASSSFCLDELAYIVDCIKAKGRLVLPVFYDVDPSHVRHQIGSYGEALAKHEEKLKDNMKRMQKWKMALNQTANLSGLHFKNEYEHEFIGKIVEVVSSKINRALLHVAHYPVGLESRVLKVMSLLEIGSDDGVHMVGIYGIGGMGKTMLARAVYNLIADQFEGLCFLHNVRENSTKYGLEYLQEKLLSKTVELNIKLGDIHEGIPIIKHRLHRKKILLVLDDVDKLEHLKVMVGEPNWFGTGSRVIITTREKHLLATHGVEKTYEVDELNKKEALELFRWNAFKNNKVDPSYKDILKRAVSYAYGLPLALEVIGSNLFGKGIEEWESALDRYDRIPNKEIQKILKVSFDALEEEEQIVFLDIACFFKGYRLIELEEILYAHHDSNMKHHIGVLVEKSLIQISELYRVILHDLIEDMGKEIVRQESPKMPEKRSRLWLAKDIVPILEENMGTPETEIIYMDFPLFDEEIEWDGEAFKRMKNLKTLIIKNCRFSKSPKYLPNGLRVLEWWGYPSNHFPPDFHPKRLSICKLPAGCYTSLELSGKFVNMKNLNLNDCKYLTKLPDVSGLPNLEKLSFEDCENLITIHNSVGYLHKLKILKARS. | 683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g05601 | 682 | SMART | till_3 | 17 | 157 | IPR000157 | GO:0007165 | |
| Seca9g05601 | 682 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 7 | 159 | IPR035897 | - | |
| Seca9g05601 | 682 | Gene3D | - | 350 | 434 | IPR042197 | - | |
| Seca9g05601 | 682 | ProSiteProfiles | TIR domain profile. | 16 | 182 | IPR000157 | GO:0007165 | |
| Seca9g05601 | 682 | SUPERFAMILY | "Winged helix" DNA-binding domain | 420 | 527 | IPR036390 | - | |
| Seca9g05601 | 682 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 15 | 184 | - | - | |
| Seca9g05601 | 682 | Pfam | NB-ARC domain | 201 | 433 | IPR002182 | GO:0043531 | |
| Seca9g05601 | 682 | Gene3D | Ribonuclease Inhibitor | 537 | 682 | IPR032675 | - | |
| Seca9g05601 | 682 | Gene3D | - | 181 | 344 | IPR027417 | - | |
| Seca9g05601 | 682 | Gene3D | - | 12 | 180 | IPR035897 | - | |
| Seca9g05601 | 682 | PRINTS | Disease resistance protein signature | 217 | 232 | - | - | |
| Seca9g05601 | 682 | PRINTS | Disease resistance protein signature | 558 | 574 | - | - | |
| Seca9g05601 | 682 | PRINTS | Disease resistance protein signature | 292 | 306 | - | - | |
| Seca9g05601 | 682 | PRINTS | Disease resistance protein signature | 385 | 399 | - | - | |
| Seca9g05601 | 682 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 18 | 679 | IPR044974 | GO:0006952 | |
| Seca9g05601 | 682 | Pfam | TIR domain | 18 | 183 | IPR000157 | GO:0007165 | |
| Seca9g05601 | 682 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 183 | 444 | IPR027417 | - | |
| Seca9g05601 | 682 | Coils | Coil | 130 | 150 | - | - | |
| Seca9g05601 | 682 | SUPERFAMILY | L domain-like | 547 | 679 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g05601 | Seca-Chr9 | 164628212 | 164630814 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g05601 | 18 | 659 | WRKY Transcription Factor Family | AT4G12020 | 27.720 | 4.60e-65 | 232 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g05601 | - | - | gmx:100814962 | 906.746 |