LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g05598	ATGGCTCATTATGAAAAGGATGAGGTGCCAATGCTGTCAGAAACACATGTGGAACGATCTGATGAACTCTTCGATTCTAATTTCCGGAGGTTTGTATCCAGGACACGGAGTGCGTCGATTTCTATTCCCATGGTCTCCATGGAGCCATATGACAGAGAGGCTAATCTTGTGGGACATACTGGTCCACTTCGTAGTGTGAGAAAAACCCCCTTTGAGCAGATGAGTGGTCCACTATATGCTACCCCTGCAACTGGAAATCTTTTGCAGGAGAGTATAGGTGTGAAAGGAAACAAAGGTGTGGAGAGCAAGACAGAAAAATTCTCTACTCTTGACATTAAAGATGAAAATCATTGGAATGAAAACTATGATAGAAAAAATGAACACTTACTAAGATCTGGGCAACTGGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACTTACTTCAAGGCTTCTCAGAAAAGTAATTCAAAATCTTCGACTACATTTGATTCAAAGTTCCAGAATTATCTTTACGGGGATGCCAAAGGTTTTGGGAGAAAACTTTTTTCCTTTTGCTCCTCATGTGTTCCTGGAGTTATGAATCCTCATGCTAAAGTTGTACAACAATGGAACCAGTTTTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTAATCTATGTGAAGGAGGCGGATAAATGTATTGCTATCAACTGGACAATGACAAAAATACTTGTTTCACTCAGAAGTATCAACGATTTTGTATATTTCTTGAACATTCTTCTCCAGTTCAGGTTGGCTTATGTTTCCCCTGAGTCAAGGGTGGTCGGTGCTGGAGATTTAGTTGACCATCCCAAGAAAATTGCTCTGAATTACCTGAAGGGTTATTTTCTTTTTGACTTATTTGTTGTAGTACCACTTCCTCAGGTAATGATATTATTTGTCATACCAAATGCCTTGGGGTCATCAGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGCAGTACTTGTACAGTATTTCCCCAGATTATTTAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACTGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATAATAAACCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCATCGTTCTGGTCTACTTCAATGCATGGAATTGATTGATTGTGATCCCAAGTTGGGAAAGATACCAAACCAGTGGAGCAATAATCCAGATGCCATTGATTGTTTGAATTCCAAATCTGATGCTTTTCCGTATGGGATCTATGCCAATGCTGTACCACTTACTACAGAAACTAGGGTTGTCAACAAATATGTATATGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACAATGGCCATCATAGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTCAGAAGGAAAGTACAGCAGGCTGAACGATATAATTGGGCTGCAACAAGGGGGGTTGATGAAGAAACGCTTCTGGAGAAGTTGCCAGAAGATCTCCGGACAGAGATAAGACGCCATCTCTTCAAATTTGTCAAAAAGGTTCGGATTTTTGCCCTGATGGATGAGCCTATTTTAGATGCCATTCGAGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAAAGTTTTGAGTCAAGGTGGTCTGGTAGAGAAGATGGTCTTTGTTGTGCGTGGAAAAATGGAAAGCATTGGAGAAGATGGAACTTCAGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTGTAATCACAGATGGTAAAAAAGTAAGGCTTCATGGACAAAGGTTACTTAGCAATAGAACAGTAAAGTGCTTAACAAATGTGGAAGCTTTTTCACTCCGAGCTGCAGATCTTGAAGAAGTCACAACCCTTTTCACGAGATCCTTGAAGAGTTCACGTGTTCAAGGAGCCCTAAGGTATGAATCACATTATTGGAGATCCCAAGCAGCAACAAGGATTCAGAATCATCAAGGAAACATGGCTAATTTTGAAAAAGATGGGGTGCCAGTGCTGTCAGAAACACATGCAAAACTATCTGGTGAACTTGTGGATTCTAATTTCCGGAGGCCTGTATCAAGGACAAAAAGTGCATCAATTTCTATTCCCATGATCTCCATGGAGTCATATGAGAAAGAAACTAGTTTTAAAGGACATAGTGGTCCACTCTATAGTGAGAGAAAAACTCCCTCTATGCAGATAAGTAGTCCACTATATGCTACTCATGGAAATGAAAATTTTTTCCAGCACACTATAATTGTGACAGGAAACAAAGTAGCAGATTGCAAGACAGAAAAACTCCAAAATTCTCTTTATGGGGATGCCAAGTGTTTGGGGAGAAAACTTTTTTCTTTCTGCTCTTCATATGTTCCTGGAGTAATGAACCCTCACACTAAAGTTGTACAGCGGTGGAACAAATTTTTGGCCATTTTCTGCTTGGTGGGAATTTTTGTGGATCCATTATTTTTCTTCTTAATCTATGTGCAGAAGGATTATAAATGTATTGTTATCAACTGGACAATGACAAAAACACTTGTTTTACTTAGAAGCATGAATGATTTTGTATATTTCTTGAACATTCTTCTCCAGTTCAGATTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATGATCCCAATAAAATTGCTGTCCATTACCTGCAGGGTTATTTTCTTCTCGACTATTTTGTTGTATTGCCTCTTCCTCAGATAATGGTATTGTCTGTCTTACCAAGACACTTGGGGTCATCAGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGTGATCCTTGTGCAGTATATTCCTAGATTATTCCGGATTCTGCCTCTGCTAAATGGCCAGTCTACAATGGGATTCATATTTGAGTCATCCTGGGCAAATTTCATTATAAATCTTCTCATGTTTATGCTTGCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCCTTGGTCTTCAGAGGGTTAATCAATGCTTGAGGGGTGCCTGCAGTAATTCTAATATTAATGAATGCATTGAAGTCATTGATTGTGGACATGGTAATATTGGAAACAACCAATCCAGCCAAACATCAGCTATGTGGATCAACAATACAGATGCTATTGCTTGTTTGAATCCTTCTCCCAATGGTTTTCGTTATGGAATCTATGTCAATGCTGTACCACTTACTATAGAAACTAATGTGGTCAACAAATATGTTTATTCTCTTTTTTGGGGATTCCAGAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGAAATGCTGCTTAGAGGCCGTGATGTGGAGGAATGGATGAGGCATCGTCGCTTACCAGAAGATCTAAGAAAGAGAGTACGACAGGCTGAACAGTATAATTGGGCTGCAACAAGGGGGGTGAATGAAGAATCGCTTCTTCAGAATTTACCAGAAGATCTCCAGATAGACATAAGGCGTCATCTCTTCAAATTTGTTAAAAAGGTATGCACTACAATGTTAATTTCTGACATAAGCAGCTAG	3783	0.4029	MAHYEKDEVPMLSETHVERSDELFDSNFRRFVSRTRSASISIPMVSMEPYDREANLVGHTGPLRSVRKTPFEQMSGPLYATPATGNLLQESIGVKGNKGVESKTEKFSTLDIKDENHWNENYDRKNEHLLRSGQLGMCNDPYCTTCPTYFKASQKSNSKSSTTFDSKFQNYLYGDAKGFGRKLFSFCSSCVPGVMNPHAKVVQQWNQFLAIFCLVAIFVDPLFFFLIYVKEADKCIAINWTMTKILVSLRSINDFVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALNYLKGYFLFDLFVVVPLPQVMILFVIPNALGSSGANYAKNLLRAAVLVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHRSGLLQCMELIDCDPKLGKIPNQWSNNPDAIDCLNSKSDAFPYGIYANAVPLTTETRVVNKYVYALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRKVQQAERYNWAATRGVDEETLLEKLPEDLRTEIRRHLFKFVKKVRIFALMDEPILDAIRERLKQKTYIKGSKVLSQGGLVEKMVFVVRGKMESIGEDGTSVPLSEGDACGEELLTWYLEHSSVITDGKKVRLHGQRLLSNRTVKCLTNVEAFSLRAADLEEVTTLFTRSLKSSRVQGALRYESHYWRSQAATRIQNHQGNMANFEKDGVPVLSETHAKLSGELVDSNFRRPVSRTKSASISIPMISMESYEKETSFKGHSGPLYSERKTPSMQISSPLYATHGNENFFQHTIIVTGNKVADCKTEKLQNSLYGDAKCLGRKLFSFCSSYVPGVMNPHTKVVQRWNKFLAIFCLVGIFVDPLFFFLIYVQKDYKCIVINWTMTKTLVLLRSMNDFVYFLNILLQFRLAYVSPESRVVGAGDLVDDPNKIAVHYLQGYFLLDYFVVLPLPQIMVLSVLPRHLGSSGANYAKNLLRAVILVQYIPRLFRILPLLNGQSTMGFIFESSWANFIINLLMFMLASHVVGSCWYLLGLQRVNQCLRGACSNSNINECIEVIDCGHGNIGNNQSSQTSAMWINNTDAIACLNPSPNGFRYGIYVNAVPLTIETNVVNKYVYSLFWGFQNFLQGLGRRRLEMLLRGRDVEEWMRHRRLPEDLRKRVRQAEQYNWAATRGVNEESLLQNLPEDLQIDIRRHLFKFVKKVCTTMLISDISS.	1261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g05598	1260	Pfam	Ion transport protein	207	524	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Seca9g05598	1260	Pfam	Ion transport protein	894	1172	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Seca9g05598	1260	SUPERFAMILY	Voltage-gated potassium channels	886	1172	-	-
	Seca9g05598	1260	Gene3D	-	204	521	-	-
	Seca9g05598	1260	SUPERFAMILY	cAMP-binding domain-like	1181	1244	IPR018490	-
	Seca9g05598	1260	ProSiteProfiles	cAMP/cGMP binding motif profile.	596	664	IPR000595	-
	Seca9g05598	1260	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	1170	1249	-	-
	Seca9g05598	1260	Gene3D	Jelly Rolls	594	718	IPR014710	-
	Seca9g05598	1260	SUPERFAMILY	cAMP-binding domain-like	524	713	IPR018490	-
	Seca9g05598	1260	CDD	CAP_ED	596	712	IPR000595	-
	Seca9g05598	1260	Gene3D	Helix hairpin bin	523	588	-	-
	Seca9g05598	1260	Gene3D	Helix hairpin bin	1185	1243	-	-
	Seca9g05598	1260	SUPERFAMILY	Voltage-gated potassium channels	200	524	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g05598	Seca-Chr9	164564648	164586275	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g05598	2	673	Ion Channels	AT3G17700	61.743	0.0	821

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g05598	K05391		-	ccaj:109789004	1193.33