Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05590 ATGTTTGATTGGTCTGCTGGTATTGTTGAAGGCTGCTGGGTCGGTCTCTGTGAAGTTTTCTGTGTCGGGACTGACTCTGATTTTGCTCCAATGGAGATGAAGGACCAAGTAGAAGGCATAAGTTCAACAACCATATTTGGCAAAGCTAGTAACTGCTCTTACAATGGTGGAACACAATCTGAAAATGTTGCAAAATTGCTTGGAAACGGCCATACCCCCAAGGTTAGGAAACCATATACCATTACTAAACAAAGGGAGAAATGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAGAAATTTTTCTCTAAGGTTGTGAGGGAATCTGATGGCAGTGCTGAAAGTTCTATTCATCCAATTGACATACCTCCTCCTAGGCCCAAGAGGAAACCCCTTCACCCATATCCCCGTAAATCAATTGACTCTTTCAAAGCACAGTCCATCCCAAATGAACCAGAAATATCTCCATCTACAAACCTTTCAGTTACAGAGAAAGACACCCCATCTCCAACCTCTGTGCTATCTTCATTTGGTTCAGAACCATTTGGCTCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCACCAAATTCTTGCACCACTGATATTCACTCAGCCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGCATGACATCCAAACCTTCTGAGGAGGAAGAGAAAGGATCTTTAGCTTCAGTCCCTTTATCCACTGTTTCAAACCCACTCATGAGCATGAAGTCTGAGATTAGTTCCAAGGAAACTGAATATTCAAAAAAAGATGCTGCCAATATGCCACACACTACTAGTATTAAGCTTTTTGGAAGAACAGTTTCTATGATAGGTAATCAGAAGTCAGTGAACGTGGCTGATGAGAATGTTAAGCCAAAAACTATAAAGTCTGGTGAAGTGGATGATGTTGAGAATGAAATGGTTGGCCAAGCAGGGGTATCCGAGAATCTGGATATACAGTTATCACTTGGAATGTGTAGTGATAACTGGCATATAACACCTGATGGAGCTAAAGTGACCAACATAGAACACCCAAAGGAGAATCTATGCTTCAGTGAATGTGCACCTGATGCATCTTTGCCATTGTGGAGTCTGTACCAAGGCCTTCCACCTTTTTACCTTAGGCCATGTAACCATCAGATTCTAAATCCTATGCCCCTTAGGCCTTCCTTGAAGGTAAAAACAAGAGAGGAGGAAAGTTCATGCACTGGTTCCAACACTGAATCAGTTTGTGATATGGAAAATCAAGGCAAGAACTCAGATGCTGTTGACTCTCAATGTCAAAAGTATCATGAGGAAGGAGTAGCACCCCAAAAGTCTGGTAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGCAAATTCTTTAATTGTTGCCATGGAAGAGAGGGAGGGACAACGAGCACGGGTGTGCTCATAG 1524 0.4226 MFDWSAGIVEGCWVGLCEVFCVGTDSDFAPMEMKDQVEGISSTTIFGKASNCSYNGGTQSENVAKLLGNGHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESSIHPIDIPPPRPKRKPLHPYPRKSIDSFKAQSIPNEPEISPSTNLSVTEKDTPSPTSVLSSFGSEPFGSAFSEQTNRCLSPNSCTTDIHSASLSPVEKENDCMTSKPSEEEEKGSLASVPLSTVSNPLMSMKSEISSKETEYSKKDAANMPHTTSIKLFGRTVSMIGNQKSVNVADENVKPKTIKSGEVDDVENEMVGQAGVSENLDIQLSLGMCSDNWHITPDGAKVTNIEHPKENLCFSECAPDASLPLWSLYQGLPPFYLRPCNHQILNPMPLRPSLKVKTREEESSCTGSNTESVCDMENQGKNSDAVDSQCQKYHEEGVAPQKSGRGFVPYKRCLAERDANSLIVAMEEREGQRARVCS. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05590 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Seca9g05590 507 PANTHER SWI/SNF COMPLEX-RELATED 64 439 - -
Seca9g05590 507 MobiDBLite consensus disorder prediction 140 204 - -
Seca9g05590 507 MobiDBLite consensus disorder prediction 429 449 - -
Seca9g05590 507 MobiDBLite consensus disorder prediction 434 449 - -
Seca9g05590 507 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 132 IPR006447 GO:0003677
Seca9g05590 507 Gene3D - 87 134 - -
Seca9g05590 507 ProSiteProfiles SANT domain profile. 83 134 IPR017884 -
Seca9g05590 507 FunFam protein REVEILLE 6 isoform X1 87 135 - -
Seca9g05590 507 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Seca9g05590 507 CDD SANT 87 130 IPR001005 -
Seca9g05590 507 MobiDBLite consensus disorder prediction 171 204 - -
Seca9g05590 507 MobiDBLite consensus disorder prediction 232 263 - -
Seca9g05590 507 SMART sant 84 132 IPR001005 -
Seca9g05590 507 SUPERFAMILY Homeodomain-like 79 133 IPR009057 -
Seca9g05590 507 Pfam Myb-like DNA-binding domain 85 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05590 Seca-Chr9 164365830 164371731 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca9g05590 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05590 - - gmx:778089 738.413