Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05588 ATGAGTGCAATGGCTAACGTTGTTGGCGTTGGGGTAGCTGCTCTTCCTCTTCCTCCATTACCCATAACAAAGTCAAGTGCTTTCACTTTCAGCCATAGGACTAAGGGTCAAAGCAAGAGACTTCATCTGAATTGCTCCCAAACCAACCACAGAACAACCCCATTCTCTTTTACCTTATCATCATCGCTCAGAAACAAAGGTAGTTGCTCTGTGTTGGCGTGTCTTCCTCCTGCTTCTGAATCCTCAAGCTCATCTCCCAACACTAGACCCCCCTCTGCTTCTTCTTCAACTAAGCTCTATGTCAGTGGGCTATCATTTCGTACCACCGAAGAGAGTTTGCGGAATGCATTTAAAAGTTTTGGTCAACTTGTAGAAGTCAATCTGGTGATGGATAAAATTGCAAATAGATCAAGGGGTTTTGCTTTTCTTCGTTATGCAACTGAAGAGGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAACTAAGGCCAAGACACAAGCAAAACACTATGCAGTAA 570 0.4386 MSAMANVVGVGVAALPLPPLPITKSSAFTFSHRTKGQSKRLHLNCSQTNHRTTPFSFTLSSSLRNKGSCSVLACLPPASESSSSSPNTRPPSASSSTKLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDKIANRSRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRPRHKQNTMQ. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05588 189 MobiDBLite consensus disorder prediction 77 97 - -
Seca9g05588 189 SUPERFAMILY RNA-binding domain, RBD 86 184 IPR035979 GO:0003676
Seca9g05588 189 Gene3D - 73 187 IPR012677 -
Seca9g05588 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Seca9g05588 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Seca9g05588 189 PANTHER NUCLEOLAR PROTEIN 8 82 181 - -
Seca9g05588 189 SMART rrm1_1 98 171 IPR000504 GO:0003723
Seca9g05588 189 SMART rrm2_1 98 171 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05588 Seca-Chr9 164362888 164366429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05588 97 186 Eukaryotic Initiation Factors Gene Family AT4G34110 31.915 7.76e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05588 - K13195 gmx:100305561 219.935