Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05575 ATGAAGTCTGTTGTTGAGTATTTCTATGAGACGTATGGTTTTGTAATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGCAATACACAGAGACCAAACTATCTGCCAATGGAGGTTTGCAAGATAGTAGAAGGTCAACGGTACTCAAAGCGGTTGAATGAGAGGCAGATCACTGCTTTGCTAAAAGTGACATGCCAGCGGCCTGTTGAGAGGGAACGAGATATCATGCAGACAGTACATCACAATGCGTATCATGAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATCAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTCCACCTTGGCTCAAATATCATGACACGGGTAGAGAAAAGGATTGTCTCCCTCAAGTTGGCCAATGGAATATGATGAACAAGAAAATGGTCAATGGGGGAACAGTCAACCACTGGTTCTGCATAAACTTCTCAAGAAATGTTCAAGATAGTGTTGCCCGTGGCTTTTGTTATGAACTTGCCCAGATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCAGTAGTCCCCCCACTTAGTGCTCGTCCTGACCAAGTTGAAAAGGTTCTTAAAACAAGGTATCATGATGCAAAGAACAAACTGCAGGGAAGGGACCTCGATCTGCTCATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGACCTCAAACGCATTTGTGAGACTGATCTTGGTCTTGTTTCCCAATGTTGTTTAACTAAACATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCCTTGAAAATTAACGTGAAGGTGGGAGGAAGGAACACTGTGCTTGTGGATGCTATTTCACGGCGCATTCCCTTAGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTGACTCATCCACATCCAGGAGAGGATTCAAGTCCATCAATAGCTGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATTACAAAGTATGCTGGTTTGGTTTGTGCTCAAGCACATCGACAGGAGCTCATTCAAGATCTTTTCAAACAATGGACAGATCCTGTCAGAGGAACATTAACTGGTGGAATGATCAAGGAACTTCTTATATCTTTCCGGCGGGCTACAGGACAAAAGCCCCAGCGTATCATATTTTACAGGGATGGTGTAAGTGAGGGGCAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCTATCCGAAAGGCTTGTGCATCACTTGAACCCAACTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCATCACACTAGGCTCTTTGCCAGTAACCATCATGACAAGAGTTCCGTGGACCGTAGTGGCAATATATTGCCTGGCACAGTTGTAGACTCTAAAATCTGCCACCCAACTGAATTTGATTTTTATCTTTGTAGTCATGCTGGAATACAGGGTACAAGCCGGCCAGCACATTATCATGTGTTGTGGGACGAAAACAATTTTACTGCTGATGCTTTACAAACACTTACGAACAACCTGTGTTACACGTAA 1533 0.4318 MKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKNKLQGRDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWTDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYT. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05575 510 Gene3D paz domain 1 47 - -
Seca9g05575 510 Gene3D - 108 281 - -
Seca9g05575 510 Gene3D - 288 510 IPR036397 GO:0003676
Seca9g05575 510 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 510 - -
Seca9g05575 510 Pfam PAZ domain 3 59 IPR003100 GO:0005515
Seca9g05575 510 FunFam protein argonaute 10-like 287 510 - -
Seca9g05575 510 FunFam Argonaute 10 108 281 - -
Seca9g05575 510 ProSiteProfiles PAZ domain profile. 3 44 IPR003100 GO:0005515
Seca9g05575 510 ProSiteProfiles Piwi domain profile. 218 510 IPR003165 GO:0003676
Seca9g05575 510 Pfam Piwi domain 219 510 IPR003165 GO:0003676
Seca9g05575 510 Pfam Argonaute linker 2 domain 70 116 IPR032472 -
Seca9g05575 510 CDD Piwi_ago-like 88 510 IPR045246 -
Seca9g05575 510 CDD PAZ_argonaute_like 1 43 - -
Seca9g05575 510 SUPERFAMILY Ribonuclease H-like 204 509 IPR012337 -
Seca9g05575 510 SMART Piwi_a_2 218 510 IPR003165 GO:0003676
Seca9g05575 510 Pfam Mid domain of argonaute 127 202 IPR032473 -
Seca9g05575 510 SUPERFAMILY PAZ domain 2 84 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05575 Seca-Chr9 164063473 164068947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05575 2 510 Eukaryotic Initiation Factors Gene Family AT1G48410 87.451 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05575 K11593 - gmx:100780375 1037.33