Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05563 ATGGGTGATGCTCATGAGACTGATAAGAACATTGAGGTGTGGAAGATTAAGAAATTGATCAAGGCTCTTGAGGCTGCAAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATTGCTCGCGTCACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATCAAAAGCAGGGTGAATCGGCAGTCTGTTCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCAAATGGGCTTGTTTTGTATACAGGCACAATTGTGACCGAAGATGGGAAGGAAAAGAAGGTGACTATTGATTTTGAGCCATTCAGGCCTATTAATGCATCTCTGTATCTTTGTGACAACAAGTTTCACACAGAAGCTCTAAATGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGATGGAAACGGTACTCTATTTGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCATAAGTTCAGTGTGGATCTCCCAAAGAAACACGGAAGAGGAGGGCAATCAGCTCTGCGTTTTGCTCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAGCTTGCAACTCAGTTTTATATCAATCCTACTACCAGCCAGCCCAATGTTTCAGGATTAATACTTGCTGGTTCTGCTGATTTTAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAGATACTTAATGTTGTTGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAACTATCTGCTGAAATTCTCTCAAATGTAAAGTTTATTCAGGAGAAGAAATTGATTGGAAAATACTTTGAGGAAATCAGCCAGGATACTGGAAAGTATGTTTTTGGTGTTGATGATACTCTAAAAGCTCTGGAGATGGGAGCTGTTGAGATACTTATTGTGTGGGAAAATCTGGATATGAACAGGTATGTCTTAAAAAACAATGCTACTGGTGAGATTATCATTAAGCACTACAACAAGGACCAGGAGTCCAACCAGAGCAATTTTCGGGATCCTGCAAGCTCTGCTGATTTTGAGGTTCAGGAAAAGATGTCTCTGTTGGAGTGGTTTGCCAATGAATACAAACGGTTTGGTTGTACTCTTGAGTTTGTCACCAATAAATCACAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGTATCTTGCGTTACCAGCTTGATATGAGATCATTTGATGATTTCTCTGATGATGGAGTTCCTCCTCTTCCTCCTCATCTGCCCGTGGTGTTGCATGGAAAGTTTGATTGTGAATCAAGATCCTTTACCCCAAAAGTGCTATCTGATATGAGTTACTCTCTCTTTTGTTCTCATATCTTTCAATCTCTAGTGCCACAAATTTCAGCAACATTCCTGGCAACATCTGCTTGTTTGTTTTTGTCGCTTAGCTCCCCTGCTGTCTGCTCTGCTCACATTTACACTCAGAAAGAAAAAAATACATGCTTCCTGAAGCAACTCGACCTGGCATCAATGAAGCAAGCTTTGATGAAGCAGCAGCTAGCTGACCAAGTTATTCTGCTTAAGGGGGTGCTTATGTTGGCACTATGCCATCGCTGGGTTGTGCTGTATACTGAGGCACTGTCCATTCCTTCTATAATGATTGGCCATATTGTCCTTTGTTTTAATTTGCACCAAGTTTGTTTATACATGTCATATTCTTCTTATTTACCTATGCCAGAACGCCCATTTTACTTAGATGCAATGCATTTTTGCACAGGCAGTGTCTACAATTCCAATCTTCCATCACTAAATCCTAAACTCTTGAGGCATTGCCTACTCCTTTCACGTGCTAAGTTGAATAATTGCTTTACATGGTTTTGTAGGTTTTTGGCTTTTTATTGTTTAAAGATGGCTGATGCTCATGAGACTGATAAGAACATTGAGGTATGGAAGATAAAAAAATTAATAAAGGCTCTTGAGGCTGCCAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCTCCACGTGATCAAATAGCTCGTGTTACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATCAAAAGCAGGGTGAATCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCAAATGGGCTTGTTCTGTATACAGGCACAATTGTGACTGAAGATGGGAAGGAAAAGAAGGTGACTATTGATTTTGAGCCATTCAGGCCTATCAATGCATCTCTTTATCTTTGCGACAACAAGTTTCACACAGAAGCTCTAAATGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATTGTAATGGATGGAAATGGTACTCTATTTGGGACCTTGAGTGGTAATACAAGAGAGGTGCTTCATAAGTTCAGTGTGGATCTCCCAAAGAAACACGGAAGAGGAGGGCAATCAGCTCTGCGTTTTGCTCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACCGCAGAGCTTGCAACTCAGTTTTATATCAATCCAACTACCAGCCAGCCCAATGTTTCAGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAAGCTATTGAACTATCTGCTGAAATATTGTCTAATGTAAAGTTTATTCAGGAGAAACGATTGATTGGAAAATACTTTGAGGAAATCAGCCAGGATACTGGAAAGTATGTTTTTGGTGTTGATGATACTCTAAAAGCTCTTGAAATGGGAGCTGTTGAGACACTTATTGTGTGGGAAAATCTGGATATGAATAGGTATGTCTTAAAAAATAATGCTACTGGAGAGATTGTCATTAAGCACTACAACAAGGAACAGGAGGCTGACCAGAGCAATTTTAGAGACCCTGTAAGCTCTGCTGATTATGAGGTGCAGGAAAAGATGCCTCTGTTGGAATGGTTTGCAAATGAATACAAGCGGTTTGGTTGCACTCTAGAGTTTGTCACCAATAAATCACAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGAGGGATCTTGCGTTACCAGCTTGATATGAGATCCTTTGATGCTTTGTCTGATGATGGAGAAGAAAGGAAGGTCAAAATACCTGCACCAGTATGGGAGGTGGTTGCGCATGCTGCTGCTGCTCCTCCTCCTCCTCCGCCTCCTTGTCTGTTTGTGGTGTTGCTTGGAAAGTCTGATTGTGAATTGAGATGCATTGCCCCAGAAGTGCTTCGTTCTGATGTGAGTTACTCTCTTGTTCTCACATATCTCAATCTCTGGGCGCCACAAATTTCAGCCATATTGCCAGCAACAGATGGTGAAAATCTGCCATATCCTCTCTTACATTTTGTTCTATTGTTATAA 3513 0.4142 MGDAHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPTTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDMNRYVLKNNATGEIIIKHYNKDQESNQSNFRDPASSADFEVQEKMSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDDFSDDGVPPLPPHLPVVLHGKFDCESRSFTPKVLSDMSYSLFCSHIFQSLVPQISATFLATSACLFLSLSSPAVCSAHIYTQKEKNTCFLKQLDLASMKQALMKQQLADQVILLKGVLMLALCHRWVVLYTEALSIPSIMIGHIVLCFNLHQVCLYMSYSSYLPMPERPFYLDAMHFCTGSVYNSNLPSLNPKLLRHCLLLSRAKLNNCFTWFCRFLAFYCLKMADAHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPTTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMNRYVLKNNATGEIVIKHYNKEQEADQSNFRDPVSSADYEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDALSDDGEERKVKIPAPVWEVVAHAAAAPPPPPPPCLFVVLLGKSDCELRCIAPEVLRSDVSYSLVLTYLNLWAPQISAILPATDGENLPYPLLHFVLLL. 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05563 1170 FunFam Peptide chain release factor subunit 1 279 432 - -
Seca9g05563 1170 NCBIfam peptide chain release factor aRF-1 660 1064 IPR004403 GO:0003747|GO:0006415
Seca9g05563 1170 NCBIfam peptide chain release factor aRF-1 13 417 IPR004403 GO:0003747|GO:0006415
Seca9g05563 1170 Gene3D eRF1 domain 2 783 924 IPR042226 -
Seca9g05563 1170 Gene3D eRF1 domain 2 136 277 IPR042226 -
Seca9g05563 1170 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 653 787 IPR024049 -
Seca9g05563 1170 Gene3D eRF1 domain 1 3 135 IPR024049 -
Seca9g05563 1170 Gene3D eRF1 domain 1 644 782 IPR024049 -
Seca9g05563 1170 FunFam Eukaryotic peptide chain release factor subunit 1 649 782 - -
Seca9g05563 1170 SUPERFAMILY L30e-like 278 420 IPR029064 -
Seca9g05563 1170 FunFam Peptide chain release factor subunit 1 926 1083 - -
Seca9g05563 1170 SUPERFAMILY Translational machinery components 789 923 - -
Seca9g05563 1170 FunFam Eukaryotic peptide chain release factor subunit 1 783 924 - -
Seca9g05563 1170 SUPERFAMILY Translational machinery components 142 276 - -
Seca9g05563 1170 SUPERFAMILY L30e-like 925 1067 IPR029064 -
Seca9g05563 1170 SMART eRF1_1_2 4 140 IPR005140 -
Seca9g05563 1170 SMART eRF1_1_2 651 787 IPR005140 -
Seca9g05563 1170 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Seca9g05563 1170 Gene3D - 279 432 IPR029064 -
Seca9g05563 1170 Gene3D - 926 1081 IPR029064 -
Seca9g05563 1170 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Seca9g05563 1170 Pfam eRF1 domain 3 281 418 IPR005142 -
Seca9g05563 1170 Pfam eRF1 domain 3 928 1065 IPR005142 -
Seca9g05563 1170 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 4 428 IPR004403 GO:0003747|GO:0006415
Seca9g05563 1170 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Seca9g05563 1170 Pfam eRF1 domain 1 665 785 IPR005140 -
Seca9g05563 1170 Pfam eRF1 domain 1 18 138 IPR005140 -
Seca9g05563 1170 Pfam eRF1 domain 2 791 924 IPR005141 -
Seca9g05563 1170 Pfam eRF1 domain 2 144 277 IPR005141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05563 Seca-Chr9 163848441 163856323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05563 5 431 Eukaryotic Initiation Factors Gene Family AT3G26618 90.867 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05563 K03265 - gmx:100785916 820.461