Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05560 ATGAACGGAAAAGCCTCTGTCTCTAAGGAACTCCATGCCAAGCACACCAAGATCTTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAAGAACAAGGCACCACGATGGGCAAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGAAGTCTTGGAGTACATATATCAAAGGTGCGGTCAACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGCCAAGTCAAATAAGCACTGGGAGGCAAAACTTCCACCAAATTTTGACAGAAATGGATATGGAATTGAGAAGTTTATTCGTGCCAAGTATGTGGAGAAAAGGTGGGCTTTGCAAGGTGAATTAAGATCATCATCAAAGTCAGATGAAATAATCTTTAACTTGAATGAGTCACCAGCTGCTGGGACTAAGAGTGGTATTCAAAGAAATAGGAGATTGTCTCTTGAGGAAAGCGTTCTTGTGAAGCATGTGGCACAAATTAGGCCTCCAGTTGCAAGATCTCATGAGGTATTCGGCTCCTTAGATTTACAGAAGAAGATTTCGCCATCATTAAAGAGGCCATCCGCATCACTTGATTTTGATAACTCCCTTGGAAAGAACAATGGTACTGTTGATCTTTTTGGCTTGCTTTCCACCCATGATGATAAACAGAATTTCTCAACTACACCTCCTCCTAGCTGGACAACATTTGATTGA 741 0.4157 MNGKASVSKELHAKHTKILEGLVKLPDNRECADCKNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNAKSNKHWEAKLPPNFDRNGYGIEKFIRAKYVEKRWALQGELRSSSKSDEIIFNLNESPAAGTKSGIQRNRRLSLEESVLVKHVAQIRPPVARSHEVFGSLDLQKKISPSLKRPSASLDFDNSLGKNNGTVDLFGLLSTHDDKQNFSTTPPPSWTTFD. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05560 246 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Seca9g05560 246 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Seca9g05560 246 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Seca9g05560 246 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Seca9g05560 246 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Seca9g05560 246 CDD ArfGap 19 119 - -
Seca9g05560 246 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Seca9g05560 246 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 246 IPR044520 GO:0005096
Seca9g05560 246 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Seca9g05560 246 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Seca9g05560 246 SMART arf_gap_3 5 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05560 Seca-Chr9 163801708 163806182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05560 19 134 C2H2 Transcription Factor Family AT4G05330 48.361 2.27e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05560 K12486 - gmx:100802691 389.423