Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05555 ATGGCTCTGTCACAACCATCCTCCTCTTCCTTTGCCAATGATTTCACCTACGATGTGTTCCTCAGCTTTAGAGGCTCTGATACTCGCCAACATTTCACTGGCAATCTCTGGAAAGCCCTTTGTGACAAGGGAATCTGCACATTCTTTGATGATAAGGAGCTTCGAAAAGGGGAAGAAATAACACCGGCACTTGAGAAGGCAATTGAAAATTCTAGGATTGCCATCATTGTTCTCTCTGAGGACTATGCATCTTCTTCATTTTGCTTAGACGAGCTTTCCAAGATCCTTGACTGCATTAAGGGAAAGGGCCGGTTAGTTTGGCCGGTCTTTTATAAGGTGGATCCTTCTGATGTGCGAAAGCAAGCAGGAACTTACGGAGAAGCAATGGCTATGCAGGAGAAGAGGTTCAAAGATAACATGGATAGGTTACAAAAATGGAAGAATGCTTTGCAACAAGTTGCTAACTTAGTTGGCTCTCATTTCATAATTAGGAATGAATATGAACATGAATTTATTTGGAAGATAGTTAAAGAGGTTTCCGACAAGATTAATCGCCAACCTTTACATGTTGCAAGTTACCCCGTTGGACTAGAACCTCGAGTACAACAAGTTCTCTCGCTTCTAGATGTTGCATCCGATAATGTGGTGCACATGGTAGGGATCTATGGAATTGGTGGAATGGGTAAAACAACACTTGCTCGTGCAGTTTATAATTATATTGCTGACATATTTGAAGGTCTGTGTTTTCTTAATGATGTGAGCAAACATGGATTAGTAGATCTCCAAAAGACACTTCTTTCTGAAATAGTTGGAGAGAAGGATATTCAGATAGGGAGTTTCAGTGAAGGGATTCCAATAATAAAGCATAGGCTCAAGAGAAAGAAGATTCTTTTAATTCTTGATGATGTTGACAATATGAAACAGCTACGAGCAATTGCTGGAAAGCTTACTTGGTTTGGTCCCGGTAGCAGAGTCATCATAACAACCCGGGACAAACATTTGCTAACAACTCATGGGATTGAAGAAAAATATGAGGTAGATGGATTGGACGAGAAAGAAGCGTGTGAGTTGCTTAGTTGGAATGCTTTTAAAAATGATAAAGTTGATCCAAGTTATAAGAATGTTATAAACCAAGTAGTAGCTTATGCTTCTGGCCTCCCACTAGCTTTGGAAGTAATAGGTTGCAACTTATTTGGAAGAGATAATAAAAAATGGGAATCTGCATTACATTCATATAAAAAGATTCCTATTAAAGAGATTCAAGAAGTACTTAAAGTGAGCTTTGATGCTTTGGAGGAGGAAGAGCAAAGTGTTTTTCTCGACATTGCTTGTTGTTTAAGAGGATATAGATTGGCAGAGGTCAAAGAAATACTTCATGCTAATCATGGTAGTGACAAGGAATATCAAATTGAAGTGTTGATTGACAAATCTCTCATAAAGATTACTGACTTGGATGAGGTGACACTACATGACCTGATTGAGGACATGGGTAAAAAAATTGTCTGTCAAAAATCACCAAAAGAGCCCGGAAAACGCACTAGGTTATGGGATCATAAAGATATAGTTAAAGTTTTAAAAGAAAATAAGGGAACAAATGAAATTGAAATCATATATCTGAATGGCTCCTTACTCAATGAAGAAAAAGAGGAAGAAGATGAAGTAGGGTGGGATGGAGAAGCTTTCAAGAATATGACAAACCTCAAAACACTGATAATTAAAAACATCCGTTTTTGCAGAGGTCCTAAACATTTTCCAAAAAGCTTAAGAGTACTCGAATGGTGGGGATATCCTTCACACCATTTACCTCCAAATAGTCTTTCCATATGCAAGTTACCTTATAGTCATTGTACCTTTTTTCTTTTGCAGAAGTTCATGAATATGAAAGTCTTAAATTTGGACTCCTGTGATTTTTTAACAGAGATATGTGACGTGTCTAATCTCCCAAATTTAAAAGAACTTTCATTTAAATATTGTATGAATCTAATTACAATTCACGAGTCGGTTGGGTACTTGGAGAAACTTGAAATTCTGAATGCTAGTGGCTGCCACAAGCTTAGGAGATTTCCACCCTTGAAGTTGCCCTTTCTTAAAGATTTTGATTTTACTTATTGTGAAAGTCTTGAGAGTTTTCCAGAAATAATAGGAAAGATGGAAAAGATAACAAAGCTTAGGTTTCAGGGCATTAGCATAAAAGCATTGCCGCTTTCATTTCGAAATCTTACTCGGCTTCAGAAATTAGATATGTCATTTTGCAAAATGTTTCAGTCAGGAAGTACCAAAGAGTGGCTATTCCCTAAACAGGACGAGGGTGAAGAAAATGTGAGCTCAATGTCGTTATCAAAGGTAGAACGTCTTACACTCGACAAATGCAATATGTCAAATGAATTTTTGGCAATAGGTCTCATGTGGTTTGTTAACATGAAAGAATTAATCCTACGGTATAATCATAATTTCACAATTGTTCCTGAATGCATCAAAGAATGCCGCTTTTTATGGAGGCTTGTTTTATATGAATGCGACCAACTTCAAGAAATTAAAGGGATTCCGCTCAGCTTAAAATATTTCTCTGCATGCAACTGCAATTCCTTGATTTCTGAGTGTAGAAGCATGTTCTTGAAGCAGGAACTACATGAGTCTGGAAACACCTACTTTATTTTGCCGGGAAGAGCAACCATTCCAGAGTGGTTTGAGCACCAGAGCAGGGGACAATCAACTTCTTTCTGGTTTCGTAACAAGTTTCCTGACATAGTGCTTTGTCTTGTTTATCCTGATCCACCGATATATTTTACTATAACCGTGATCATCAACAACAAAAAATTTATGTATTTTGATATGGACGATGTATGGTTTCCATCGCCATCAGGAGGTGATACACATCTTCTTCATTTGCTGAGGGATAGGTTCATTCCTAATCAGGACATAGAACTTTCAGAAAATTTCTATGAAACACTTTTAGAAAATCAGTGGATACGATAG 2976 0.3753 MALSQPSSSSFANDFTYDVFLSFRGSDTRQHFTGNLWKALCDKGICTFFDDKELRKGEEITPALEKAIENSRIAIIVLSEDYASSSFCLDELSKILDCIKGKGRLVWPVFYKVDPSDVRKQAGTYGEAMAMQEKRFKDNMDRLQKWKNALQQVANLVGSHFIIRNEYEHEFIWKIVKEVSDKINRQPLHVASYPVGLEPRVQQVLSLLDVASDNVVHMVGIYGIGGMGKTTLARAVYNYIADIFEGLCFLNDVSKHGLVDLQKTLLSEIVGEKDIQIGSFSEGIPIIKHRLKRKKILLILDDVDNMKQLRAIAGKLTWFGPGSRVIITTRDKHLLTTHGIEEKYEVDGLDEKEACELLSWNAFKNDKVDPSYKNVINQVVAYASGLPLALEVIGCNLFGRDNKKWESALHSYKKIPIKEIQEVLKVSFDALEEEEQSVFLDIACCLRGYRLAEVKEILHANHGSDKEYQIEVLIDKSLIKITDLDEVTLHDLIEDMGKKIVCQKSPKEPGKRTRLWDHKDIVKVLKENKGTNEIEIIYLNGSLLNEEKEEEDEVGWDGEAFKNMTNLKTLIIKNIRFCRGPKHFPKSLRVLEWWGYPSHHLPPNSLSICKLPYSHCTFFLLQKFMNMKVLNLDSCDFLTEICDVSNLPNLKELSFKYCMNLITIHESVGYLEKLEILNASGCHKLRRFPPLKLPFLKDFDFTYCESLESFPEIIGKMEKITKLRFQGISIKALPLSFRNLTRLQKLDMSFCKMFQSGSTKEWLFPKQDEGEENVSSMSLSKVERLTLDKCNMSNEFLAIGLMWFVNMKELILRYNHNFTIVPECIKECRFLWRLVLYECDQLQEIKGIPLSLKYFSACNCNSLISECRSMFLKQELHESGNTYFILPGRATIPEWFEHQSRGQSTSFWFRNKFPDIVLCLVYPDPPIYFTITVIINNKKFMYFDMDDVWFPSPSGGDTHLLHLLRDRFIPNQDIELSENFYETLLENQWIR. 992
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05555 991 PRINTS Disease resistance protein signature 383 397 - -
Seca9g05555 991 PRINTS Disease resistance protein signature 218 233 - -
Seca9g05555 991 PRINTS Disease resistance protein signature 738 754 - -
Seca9g05555 991 PRINTS Disease resistance protein signature 290 304 - -
Seca9g05555 991 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 783 IPR044974 GO:0006952
Seca9g05555 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 442 IPR027417 -
Seca9g05555 991 Gene3D - 182 342 IPR027417 -
Seca9g05555 991 SUPERFAMILY "Winged helix" DNA-binding domain 418 526 IPR036390 -
Seca9g05555 991 SMART till_3 16 156 IPR000157 GO:0007165
Seca9g05555 991 Gene3D - 348 432 IPR042197 -
Seca9g05555 991 Pfam NB-ARC domain 200 422 IPR002182 GO:0043531
Seca9g05555 991 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Seca9g05555 991 Gene3D - 16 181 IPR035897 -
Seca9g05555 991 SUPERFAMILY L domain-like 554 896 - -
Seca9g05555 991 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Seca9g05555 991 Pfam TIR domain 17 184 IPR000157 GO:0007165
Seca9g05555 991 Gene3D Ribonuclease Inhibitor 469 904 IPR032675 -
Seca9g05555 991 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca9g05555 Seca-Chr9 163718567 163724517 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05555 11 748 WRKY Transcription Factor Family AT4G12020 28.553 5.62e-70 253
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05555 - - gmx:100814962 1046.96