LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g05553	ATGGCTCTGTCACAACCATCCTTCTCTTCCTTTGCCAATGGTTTCACCTACGATGTGTTCCTCAGCTTTAGAGGCTGTGATACTCGCCACCATTTCACTGGCAATCTCTGGAAAGCCCTTTGTGACAAGGGAATCTGCACATTCTTTGATGATAAGGAGCTTCGGAAAGGGGAAGAAATAACACCAGCACTTGAGAAGGCAATTGAAAATTCCAGGATTGCCATCATTGTTCTATCTGAGGACTATGCATCTTCTTCATTTTGCTTGGATGAGCTTTCCAAGATCCTTGACTGCATTAAGGGAAAGGGCCGGTTAGTTTGGCCGGTCTTTTATAAGGTTGATCCTTCTGATGTGCGAAAGCAAACAGGGACTTACGGAGAAGCAATGGCTATGCAGGAGAAAAGGTTCAAAGATAACATGGATAGGTTGCAAAAATGGAAGAATGCTTTGCATCAAGTTGCTAACTTAGTTGGCTCGCATTTCATACTTAGGAATGAATATGAACATGAATTTATTTGGAAGATAGTTAAAGAGGTTTCCGACAAGATTAATCGCCAACCTTTACATGTTGCACGTTACCCTGTTGGACTAGAACCTCGAGTACAACAAGTTCTCTCACTTCTAGATGTTGCATCCGATAATGTGGTGCACATGGTAGGGATCTATGGAATTGGTGGAATGGGTAAAACAACACTTGCTCGTGCAGTTTATAATTATATTGCTGACATGTTTGAAGGTCTGTGTTTTCTTAATGATGTGAGAAAACATGGATTAGTAGATCTCCAAAAGACACTTCTTTATGATATAGTTGGAGAGAAGGATATTCAGATAGGGAGTTTCAGTGAAGGGATTCCAATAATCGAGCGTAGGCTCAAGGGAAAGAAGATTCTTTTAATTCTTGATGATGTTGACAATATGAAACAGTTATGGGCAATTGCTGGAAAGCTTACTTGGTTTGGTCCCGGTAGCAGAGTCATCATAACAACCCGAGACAAACATTTGCTAACAACTCATGGGATTAAAAAAACTTATGAGGTAGATGGATTGAACGAGAAAGAAGCGTGTGAGTTGCTTAGTTGGAATGCTTTTAAAAATGATGAAGTTGATCCAAGTTATAAGAATGTTATAAACCAAGTAGTAGCTTATACTTCTGGCCTCCCACTGGCTTTGGAAGTAATAGGTTGCAACTTATTTGGAAGAGATACTAAAAAATGGGAATCTGCATTACATTCATATGAAAAGATTCCTATTAAAGAGATTCAAGAAGTACTTAAAGTGAGCTTTGATGCTTTGGAGGAGGAAGAGCAAAGTGTTTTTCTTGACATTGCTTGTTGTTTAAAAGGATATAGACTGGCAGAGGTCAAAGAAATACTTCATGCTAATCATGGTAGTGGCATGGAGTATCAAATTGAAGTGTTGATTGACAAATCTCTCATAAAGATTATTGACTGTGATAAGGTGACACTACATGACCTGATTGAGGATATGGGTAAAAAAATTGCTAGTCAAAAATCACCCAAAGAGCCAGGAAAACGCACTAGGTTATGGGATCATAAGGATATAGTTAAAGTTTTAAAAGAAAATAAGGGAACAAATGAAATTGAAATCATATATCTGAATGGCTCCTTACTTAATGAAGAAAAAGAGGAAGAAGATGAAGTAGATTGGGATGGAGAAGCTTTCAAGAATATGACAAACCTCAAAACGCTGATAATTAAAAACATCCGTTTTTCCAAAGGTCCTAAACATTTTCCAAAAAGCTTAAGAGTACTCGAATGGTGGGGATATCCTTCACACCATTTACCTCCAAATAGACTTTCCATATGCAAGTTACCTTATAGTCATTGTACCTGTATGTTTGGAAGCGCGTTGCAGAATCACCTTAAAGCGGGTTGGATGCAAAAGATACAGTGGATAACATTCTTTTTGATGTGCATCCATGTGTTTAAGTTGGTGAATATGACAGTTTTAAATTTGGATAACTGTGAATATTTAACAGAGATATGTGACATGTCTAGTCTCCCAAATTTAAAAAAACTTTCATTTCAAGAATGTAAGAATCTTATTACAATTCACGATTCGGTTGGGTACTTGGAGAAACTTGAAATTTTGAAAGCTAGTGGCTGCCACAAGCTTAGGAGTTTTCCACCCTTCAACTTGCCCTCTCTTAAAGATTTTGATTTTATTTATTGTGAAAGTCTCAAGAGTTTTCCAAAAATAACAGGAAAGATGGAAAAGATAACTAAGCTTAGGTTTCAGGGCATTAACATGAAAGAACTACCGCATTTATTTCGAAATCTTACTAGGCTTCAAAATCTTCAAGATCTTGAAATGATATATTGCAAAATGTTTCAGTCAGGAAAGAGTGAGCTATTCCCTAAACAGGACGGGGGTGAACAAAAAGTGAGCTCAATGTCGTTATCAAAGGTGGAACATCTTACACTCCGAGGATGCAATATGTCAAATGAATTTTTGGCAATAGGTCTCATGTGGTTTGTTAACCTGAAAGAATTAATCCTACGGTATGATCATAATTTCACAATTGTTCCTGAATGCATCAAAGAGTGCCGCTTTTTATGGAAGTTTCATTTATCTGAATGCGACCAACTTCAAAAAATTAAAGGGATTCCCCCCAGCTTAAAATATTTCTCTGCACATGGTTGCAATTCCTTGACTTCTGAGTGTAGAAGCATGTTCCTGAAGCAGGAACTGCATGAGCTTGGAAACACCAGCTTTGTTTTGCCGGGAAGAGCAAGCATTCCGGAGTGGTTCGAGCACCAAAGCAGGGGACAATCAACTTCTTTCTGGTTTCGTAACAAGTTTCCTGACATAGTGCTCTGTCTTGTTTGTCCTGATCCACAGATATATTTACATTCACGTTTAGCCGTGATCATCAACGACAAGAAATTTTTCTATATGGATTTGGATTGTGCCGATTATATTTTTCTATCGGCGATTGCAGGTCATACACATCTTCTTCATTTGCTAAGGGAAAATTTCATTCATAATCTGGATGAAGCACTTTTAGAAAATCAGTGGAACCATGCGAAGGTTACAATAGAGAGTCACGAAGTTATATTCAGATATGGAGTGGAATATGGAGTCATATTGGAAATGCTAAATAGCATAGATATTGGAATCCATGTATTGAAAGAGAAAAGTGTCATGGAGGATATTCGATTCACCAATCCTTATGAAAAGCCACAATTTCCTGAGAATGATGTTGAAGATCTTACTATCTCACTCTCTAAAATTCAATTCTGA	3264	0.3765	MALSQPSFSSFANGFTYDVFLSFRGCDTRHHFTGNLWKALCDKGICTFFDDKELRKGEEITPALEKAIENSRIAIIVLSEDYASSSFCLDELSKILDCIKGKGRLVWPVFYKVDPSDVRKQTGTYGEAMAMQEKRFKDNMDRLQKWKNALHQVANLVGSHFILRNEYEHEFIWKIVKEVSDKINRQPLHVARYPVGLEPRVQQVLSLLDVASDNVVHMVGIYGIGGMGKTTLARAVYNYIADMFEGLCFLNDVRKHGLVDLQKTLLYDIVGEKDIQIGSFSEGIPIIERRLKGKKILLILDDVDNMKQLWAIAGKLTWFGPGSRVIITTRDKHLLTTHGIKKTYEVDGLNEKEACELLSWNAFKNDEVDPSYKNVINQVVAYTSGLPLALEVIGCNLFGRDTKKWESALHSYEKIPIKEIQEVLKVSFDALEEEEQSVFLDIACCLKGYRLAEVKEILHANHGSGMEYQIEVLIDKSLIKIIDCDKVTLHDLIEDMGKKIASQKSPKEPGKRTRLWDHKDIVKVLKENKGTNEIEIIYLNGSLLNEEKEEEDEVDWDGEAFKNMTNLKTLIIKNIRFSKGPKHFPKSLRVLEWWGYPSHHLPPNRLSICKLPYSHCTCMFGSALQNHLKAGWMQKIQWITFFLMCIHVFKLVNMTVLNLDNCEYLTEICDMSSLPNLKKLSFQECKNLITIHDSVGYLEKLEILKASGCHKLRSFPPFNLPSLKDFDFIYCESLKSFPKITGKMEKITKLRFQGINMKELPHLFRNLTRLQNLQDLEMIYCKMFQSGKSELFPKQDGGEQKVSSMSLSKVEHLTLRGCNMSNEFLAIGLMWFVNLKELILRYDHNFTIVPECIKECRFLWKFHLSECDQLQKIKGIPPSLKYFSAHGCNSLTSECRSMFLKQELHELGNTSFVLPGRASIPEWFEHQSRGQSTSFWFRNKFPDIVLCLVCPDPQIYLHSRLAVIINDKKFFYMDLDCADYIFLSAIAGHTHLLHLLRENFIHNLDEALLENQWNHAKVTIESHEVIFRYGVEYGVILEMLNSIDIGIHVLKEKSVMEDIRFTNPYEKPQFPENDVEDLTISLSKIQF.	1088

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g05553	1087	SUPERFAMILY	"Winged helix" DNA-binding domain	418	526	IPR036390	-
	Seca9g05553	1087	SUPERFAMILY	L domain-like	555	910	-	-
	Seca9g05553	1087	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	442	IPR027417	-
	Seca9g05553	1087	Gene3D	Ribonuclease Inhibitor	479	929	IPR032675	-
	Seca9g05553	1087	Gene3D	-	16	181	IPR035897	-
	Seca9g05553	1087	PRINTS	Disease resistance protein signature	218	233	-	-
	Seca9g05553	1087	PRINTS	Disease resistance protein signature	290	304	-	-
	Seca9g05553	1087	PRINTS	Disease resistance protein signature	383	397	-	-
	Seca9g05553	1087	PRINTS	Disease resistance protein signature	672	688	-	-
	Seca9g05553	1087	Gene3D	-	182	342	IPR027417	-
	Seca9g05553	1087	Pfam	NB-ARC domain	200	424	IPR002182	GO:0043531
	Seca9g05553	1087	FunFam	Disease resistance protein (TIR-NBS-LRR class)	13	185	-	-
	Seca9g05553	1087	Gene3D	-	348	432	IPR042197	-
	Seca9g05553	1087	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	158	IPR035897	-
	Seca9g05553	1087	SMART	till_3	16	156	IPR000157	GO:0007165
	Seca9g05553	1087	ProSiteProfiles	TIR domain profile.	15	183	IPR000157	GO:0007165
	Seca9g05553	1087	SMART	AAA_5	215	349	IPR003593	GO:0016887
	Seca9g05553	1087	Pfam	TIR domain	17	184	IPR000157	GO:0007165
	Seca9g05553	1087	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	740	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g05553	Seca-Chr9	163680824	163684948	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g05553	8	777	WRKY Transcription Factor Family	AT4G12020	27.980	1.54e-63	235

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g05553	-		-	gmx:100814962	1092.8