Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05548 ATGGCTATGCGATCACCATCCTTTACCTTTGAATTCACCTACGATGTGTTCCTTAGCTTCAGAGGCTCCGATACTCGCCACGGTTTTACTGGCAATCTCTGGAAAGCTCTTCATGACAAGGGAATCCGCACCTTCATTGATGACAAGGAGCTTCAAAGAGGTGACGAAATCACACCAGCACTTGTCAAGGCCATTGAAGAGTCCAGGATTGCCATCCCTGTGTTCTCTGCCAACTATACTTCTTCTTCATTTTGCCTCGACGAACTTGTCACCATCATTGAACGCATCAAGGCAAACGGTCGGTTGGTTTTACCCATTTTTTATGATGTGGATCCTTCTCATGTCCGTTATCAGACTCAGAGTTATGGAGAAGCACTAGCTAAGCATGAAGCGAAGTTCACAAATAGCAAGGAAAAGTTCGTGGATAATATGGAGAGGTTGCAAAAGTGGAAGATGGCTCTTCATCAAGCAGCTAACTTGTCTGGAATGCATTTCAAACTTGGGAATGAATATGAACATGAGTTCATTGGGAAGATAGTTAATGAGGTGTCCGGCAAGATTAATCGCATTCCCTTACATGTTGCGGATTACCCTATTGGACTAGAGTCTCGAATGCTTAAAGTAATGTCACTTTTGGATGTTGGATCAGGTGATGGAGTCCACATGGTAGGGATCTATGGCATTGGTGGAATAGGTAAAACAACACTTGCTAGAGCAGTTTATAATTCTATTGCTGACTCATTTGAAGGTTTATGTTTTCTTGATGATGTGAGAGAAAATTCGATTAAACATGGATTAATTCATCTCCAAGAGACGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTTCATAAAGGAATTTCAATTATAATGCATAGGCTCCACCGAAAAAAGGTTCTTTTGATTCTTGACGATGTTGACAATTTAGAACAGTTGCATGCAACTGTTGGAGGGCCTAATTGGTTTGGTAACGGCAGCAGAGTCATTATTACAACTCGGGACACACATTTGTTGACTAGACATGGGATTGAGAAAAGATATAAGGTAGTGGAATTAAATGAGGAAGAAGCACTTGAATTGCTTTGTTGGAATGCTTTTAGAAATGACATGGTTGATCCAAGCTATGAGTTCATTTTAAACCAAACATTAGCTTATGCTTCTGGCCTTCCGCTGGCTTTGGAAGTTATAGGTTCCCTTTTGCTTGGGAAAAGCATTCAAGAATGGGGATCTGCAATAGATGGGTTTAAACAAATACCTTGTAAAAGAATCCAAGATAAACTTGAAGTAAGCTATAATGCTTTAGAAGAACAACAAAAGAAAATTTTTCTTGACATTGCTTGTTGTCTTAAAGGATACGAATTGGCAGAGGTTGAAGAAATACTTTGCGCTCATTATGGTGTCCCTGTGAAATATGGTATTGGAGTATTGGTTGATAAATCTCTCATAAAAATTACTTGGCGGGGTAAGGTGATAGTGACAATGCATGACTTGATAGAGGACATGGGCAAAGAAATTGTTCGACAAAGATCACCAGAAGAGCTAGGAAAACGTAGCAGGTTATGGTTTCATGAAGATATAGTTCAAGTTTTAGAAGAAAATTTGGGAACAAGTAAAATTGAAATGATACATCTAGATTCCCTATTCTATGGAGAAATAAGATGGAATGGAAAGGCTTTCAAGAAGATGAAAAACCTCAGAACACTTATTATAAAAAAAGATGGCCATTTTTCCAAAGGTCCGGAGTATCTTCCAAATAGCTTGAGAGTATTGGAATGGAACAAATATCCTTCACCAAATTTACCATCTGATTTTCATCCGAAGAAACTTTCCATATGCAAGTTACCCAAAAGTTGCCTCACATCATTTGGGATGCATGGCTCATTGAAGACAAGTAAGTTCATGAACATAAGTGTTTTAAACTTGGACAGCTGTGGAGGTTTAACAAGAATACCCGATGTATCTGGTCTCACAAATTTAGAAAGACTTTCATTTAAAGAATGTGAGAATCTAATTACAATTCACCATTCAGTTGGGTTGCTCAATAAACTTAAAATCTTGGATGCTTTCGATTGCAGCAAGATTAAGAAATTTCCACCCCTCCAGTTGATGTCTCTTGAAAAACTGGAACTTTCCTACTGTTCAAGCTTGGAAAGTTTTCCAGAAATATTAGTAAGGATGGAAAATATAACAGACCTTCACTTGGAAGGAACTTGCATAGAAGAATTCCCATCTTCATTTGGAAATCTTAGCCGACTTCAAAGGTTAGTCCTGAGGGACTATGATAAAACTATACAGTTACCAATAAGCATCATGGTTATGATGCCAGAGCTAGCTGAGATTTGTGTCACAGGAGTTTATGGATTGATATTGGCAAATGAGGAAGAGGGTGAAGAAAAAGTGAGCTCAATGTTGCCTTCTAACGTAAAACGTATTGAGTTCATTTGTTGCAACTTTTCAGATGGATTTTTGAATTTCAGTCTCACATGGTGTGCTAACGTGAAAGAAGTATCTCTATGCGGGAGTGATTTTACAATTGTTCCTGAATGCATCAAAGAATGTCGCTTTCTACGGAAGCTTAATGTGGATTATTGCAAACGACTTCGAGAAATTAGAGGGATTCCACCCAGCTTAGAATATTTATCTGCAGAAGGATGTGAATCCTTAAGTTTCCCGTGTAGAAGCATGTTACTGAATGAGGAACTGCATGAGGCTGGAAACACAAACTTCCTTTTTCCAAGCCCAACAACAGGGATACCAGAGTGGTTCGAGCACCAGTGTAGGGGACCGTCAATTTCTTTCTGGTTTCGTAAAAACTTCCCTCACATAGCTCTCTGTCTTCTTTATCCACCAATATGGGAACTGCTAGGTGATATAATCGTGTTCATCAACGGCAAGGGATTTTACTATGTAGATGGCGAGAAATATTACTGGAGAGATAAGATATATGTCGATGAAATTGACTATACAGATGATGACAAGAACGAATGTACAGATGATGAGAATGACTGTATAGATGAGGACGAGAATGACAAGTTTCAACCTTTACCAAAGTTTCCGGGTCATACATTTCTTTTTCATATTCTAGTGAAAAATTTAGTGGGAATGAAGGGTAAATTTAATCTGGATGAAGCACTTTCAAAAAATGAATGGAACCATGTGAAGGTTATCATAGAAGCATACAATGAGCCAATCAGAATTGGAATTCATGTATTGAAAGAGAGAAGCAACAATATTCGATTCACTAATCCTTACAAAAAGAGGAAATTAGACTTGAACTTGCCACCACTTCCAGAGAATGATGTTAATACCAAGCTTACTCTGTAA 3339 0.3833 MAMRSPSFTFEFTYDVFLSFRGSDTRHGFTGNLWKALHDKGIRTFIDDKELQRGDEITPALVKAIEESRIAIPVFSANYTSSSFCLDELVTIIERIKANGRLVLPIFYDVDPSHVRYQTQSYGEALAKHEAKFTNSKEKFVDNMERLQKWKMALHQAANLSGMHFKLGNEYEHEFIGKIVNEVSGKINRIPLHVADYPIGLESRMLKVMSLLDVGSGDGVHMVGIYGIGGIGKTTLARAVYNSIADSFEGLCFLDDVRENSIKHGLIHLQETLLSEIVGEKDIKIGSVHKGISIIMHRLHRKKVLLILDDVDNLEQLHATVGGPNWFGNGSRVIITTRDTHLLTRHGIEKRYKVVELNEEEALELLCWNAFRNDMVDPSYEFILNQTLAYASGLPLALEVIGSLLLGKSIQEWGSAIDGFKQIPCKRIQDKLEVSYNALEEQQKKIFLDIACCLKGYELAEVEEILCAHYGVPVKYGIGVLVDKSLIKITWRGKVIVTMHDLIEDMGKEIVRQRSPEELGKRSRLWFHEDIVQVLEENLGTSKIEMIHLDSLFYGEIRWNGKAFKKMKNLRTLIIKKDGHFSKGPEYLPNSLRVLEWNKYPSPNLPSDFHPKKLSICKLPKSCLTSFGMHGSLKTSKFMNISVLNLDSCGGLTRIPDVSGLTNLERLSFKECENLITIHHSVGLLNKLKILDAFDCSKIKKFPPLQLMSLEKLELSYCSSLESFPEILVRMENITDLHLEGTCIEEFPSSFGNLSRLQRLVLRDYDKTIQLPISIMVMMPELAEICVTGVYGLILANEEEGEEKVSSMLPSNVKRIEFICCNFSDGFLNFSLTWCANVKEVSLCGSDFTIVPECIKECRFLRKLNVDYCKRLREIRGIPPSLEYLSAEGCESLSFPCRSMLLNEELHEAGNTNFLFPSPTTGIPEWFEHQCRGPSISFWFRKNFPHIALCLLYPPIWELLGDIIVFINGKGFYYVDGEKYYWRDKIYVDEIDYTDDDKNECTDDENDCIDEDENDKFQPLPKFPGHTFLFHILVKNLVGMKGKFNLDEALSKNEWNHVKVIIEAYNEPIRIGIHVLKERSNNIRFTNPYKKRKLDLNLPPLPENDVNTKLTL. 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05548 1112 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 189 - -
Seca9g05548 1112 Gene3D Ribonuclease Inhibitor 537 709 IPR032675 -
Seca9g05548 1112 SUPERFAMILY "Winged helix" DNA-binding domain 427 536 IPR036390 -
Seca9g05548 1112 Gene3D Ribonuclease Inhibitor 710 907 IPR032675 -
Seca9g05548 1112 Pfam NB-ARC domain 205 439 IPR002182 GO:0043531
Seca9g05548 1112 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 162 IPR035897 -
Seca9g05548 1112 SUPERFAMILY L domain-like 512 928 - -
Seca9g05548 1112 PRINTS Disease resistance protein signature 298 312 - -
Seca9g05548 1112 PRINTS Disease resistance protein signature 705 721 - -
Seca9g05548 1112 PRINTS Disease resistance protein signature 222 237 - -
Seca9g05548 1112 PRINTS Disease resistance protein signature 391 405 - -
Seca9g05548 1112 Pfam TIR domain 14 187 IPR000157 GO:0007165
Seca9g05548 1112 Gene3D - 9 185 IPR035897 -
Seca9g05548 1112 Gene3D - 356 440 IPR042197 -
Seca9g05548 1112 Coils Coil 425 445 - -
Seca9g05548 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 450 IPR027417 -
Seca9g05548 1112 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 876 IPR044974 GO:0006952
Seca9g05548 1112 SMART AAA_5 219 360 IPR003593 GO:0016887
Seca9g05548 1112 Gene3D - 186 350 IPR027417 -
Seca9g05548 1112 ProSiteProfiles TIR domain profile. 12 187 IPR000157 GO:0007165
Seca9g05548 1112 SMART till_3 13 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05548 Seca-Chr9 163632399 163636295 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05548 6 775 WRKY Transcription Factor Family AT4G12020 31.100 7.03e-81 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05548 - - gmx:100814962 1260.36