Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05546 ATGGCTCTGTTACCACCATCCTCCTCCTCCTCTTCATCCTTCACCTATGATGTGTTCCTCAGCTTCATTGATGATGAGGAGCTTCCAAGAGGAGATGAAATCACACCAGCACTTGTCAAGGCCATCAAAGAGTCCAGTGTTGCCATTCCTGTATTCTCTGAGAACTATGCTTCTTCTTCATTCTGCTTAGATGAACTTGTCAACATCATTGACCATGTCAAAGGGGTTGGTAGGTTGATTTTGCCCGTTTTCTACAAGGTGGATCCTTCTCATATGCGCCATCAGACTGGGAGTTATGGAGAGGCACTGGCCAAGCATGAGGAAAGGCTAACAAATAATATGGAGAGGTTGCAAAAATGGAAGATGGCTCTTCAAAAAGCAGCTAACTTGTCTGGCATACATTTCAAACTCGAGGATGGATATGAATACAAGCTTATCGATAGGATTGTGGAAGAGGTCTCCAACAATATTAGGCGCAATCCATTACTACATGTTGCAGATCACCCTGTTGGGTTGGAGTCTCGAATGCATAAAATAATGTCACTTTTGGATGTTAAATCTAGTGATGAAGTTCTCATGGTAGGGATCTATGGACTTGGAGGAATAGGTAAAACAACCCTTGCTCGAGCAGTTTATAATTCCATTGCTAACTCATTTGAAGGTTCATGTTTTCTTCATAATGTGAGAGAAAATTCAACTAAACAACGTGGCTTAGAACATCTGCAAGAGGAGCTCCTTTCCAAAACAATTGGATTGAATGTGAAGCTAGGAGATGTCAGCGAAGGAATTCCAAAAATAAAGCAAAAGCTACAAAAAAAGAAGGTTCTTTTGATTCTCGATGATATTGACAATGAAAAGCAGTTGAAGGCTATGGTTGGAGAGCCTAATTGGTTTGGTCCTGGAAGCAGAGTCATCGTTACAACTCGGGACAAACACTTGTTAGCAAATCATGGGGTTGAGAGAACATATGAAATACATAAGTTAAGCGAGGAGGAAGCTCTTGAATTGTTTAAGTGGAATGCATTTAAACAAACTGACAAAGTTGATCCAAGTTATGAGAACATTCTAAAGGAAGCAGTAGTTTATGCTTCTGGCCTTCCCTTGGCTTTGGAAGTTATAGGTTCCCTTTTGTTTGGGAAAAGTATTCAAGAATGGAGATCTGCAATTGATAGGTTTAAAGAAATTCCTAGCAAAGAAATCCTAGACAAACTTAAAATAAGCTATGATGGTTTAGAAGAAAATCAACAGAAAATTTTTCTTGACATTTCTTGTTGCCTCAAAGGATATCGTCTAAGAGAGATTGAAGAGATACTTTCTGCTCATTATGGAGTTTGCGTAAAATATGATATTGGAGTGTTAGCTGATAAATCTCTCATAAAGATTAGTTATTTTGTGACAATGCATGACTTGATAGAGGAAATGGGAAAAGAAATTGTTCGACAAGAATCACCAAAAGAACATGGAAAACGCAGTAGGTTATGGTTTCATGAAGATATAATTCAAGTTTTAGAAGAAAATACGGGAACAAGTGAAATTGAAATGATACATCTGAATTCTTGGTTGCGTGAAGAAGTAAAATGGGATGGTGAGGCTTTCAAAAAGATGAAAAACCTCAAAACTCTTATTATACGTCATACCAAGTTTTGCAAAGGTCCTGAGTATCTTCCAAACAGCTTAAGAGTATTGGAATGGATGGTATATCCTTCACCAGATTTACCCCCTGATTTTCATCCGAAGAATCTTTCTACATGCAACTTATTCGGAGAACGGCTCACATCATTTGAGATGCATGGGTCACTGAAACCGAGTAAGTTCATGAATATGAGAGTTTTAGAGCTTGACTCCTGTGGAGGTTTAACAAGAATAGTGGATGTATCTTGTTTCCCAAATTTAGAAAAACTTTCATTTAGATATTGTGGGAATCTAGCTACAATTCACAATTCAGTTGGGTTTCTGCATAAACTTAAACTCTTGGATGCTCGAGGTTGCTACAAGATTAAGGAATTTCCACCCCTCCAATTGCCGTCTCTTCAAGAACTCCATCTTTCCGAATGCTCAAGGCTTGAGAGTTTTCCAGCAATAAATGTAGAGATGAAATATATGACAGAGCTTGACTTGTTTGGAACTCCCATAAAAGAATTCCCATCTGCATTTCGGAATCTTAGTGGGCTTCAAAGGTTAAAGCTGGAAAATGAAGAAAGTGTTCAGCAGTTTGTAAAAAGTAGCATTCTCTTGATGCCACAGTTGGCTGAGATTCATGTCCGTACACTCCAAGAAACTATAAAAAAGGACAGTAAAGTTCTGTCTTTCAGGAACTGGGAATTTTCAGATGAACTTTTGGCATTCAGTCTCTCGTGGTGTGCTAACGTGAAAAAATTGGACTTATCCAAAACTAATTTGACAGTTGTTCCTGAATTCATCAAAGAATGTCGTTTTTTACAGAAGATTCATTTGGATGGATGCAAACAACTTGAAGAAATTAGAGGGATTCCACCCAACCTAGAATATTTATCTGCAAGAGAATGTGAATCCTTGAGTCCCGAGTGTAGAAGCATGTTATTGAATCAGGAAGTGCATGAGGCTGGAAACACACGCTTCATTTTGCCAAGCCCCCCAACAACAGGGATACCAGAGTGGTTCGAGCACCAGAGCATGGGAGGGGAAATTTCTTTCTGGTATTGTAACAACTTCCCTCACATAGCTCTTTGTGTTGTTTGTCCATCGAGATGGGAGTGGGGGAAGTTGAGGAAGAGTGTAACCATGATCATCAACAAGAAGAAATTTCAATATATAGAATACTGTATAGCATTGAAAGATAACATCAACAACTCTACAGATGAAGACGACATGGACTGTATAGATGAAGACAACATGGACTGTATTGATAACTCTAAAGATGACGACAAAATTGATTGTACAGATGACGGCCACTATTATACACATCTTTTTCATATTCGAGCTGAAAATGTCTGGGAATGGGGAGAGAAGGGGAAGCAAAAAGTTATGCGATCTGTTAACTCCCCCTTTCCAAAACCCTTAGCGGGAAGGAAGCGGAAATATAAAAATGAGTGGAACTGTGTGAAGGTTATCATAAACCATCATATGCCAATCAAATTTGGAATTCATGTATTAAGTGGCCATATTCAATTTACCAATCCTGCATTTACTTTGCGACAACAAATCTGCTCGAATGAAAGGCCTTCAAAATATCTAAACCCCGAGAAATCCAAGTCACCTTTGAGCAATTGGTGGCATAATAAGTTGTTCCTGGAAAGATCAAGGAGCAGTGTCAAAGAGGAAAACTGA 3306 0.3881 MALLPPSSSSSSSFTYDVFLSFIDDEELPRGDEITPALVKAIKESSVAIPVFSENYASSSFCLDELVNIIDHVKGVGRLILPVFYKVDPSHMRHQTGSYGEALAKHEERLTNNMERLQKWKMALQKAANLSGIHFKLEDGYEYKLIDRIVEEVSNNIRRNPLLHVADHPVGLESRMHKIMSLLDVKSSDEVLMVGIYGLGGIGKTTLARAVYNSIANSFEGSCFLHNVRENSTKQRGLEHLQEELLSKTIGLNVKLGDVSEGIPKIKQKLQKKKVLLILDDIDNEKQLKAMVGEPNWFGPGSRVIVTTRDKHLLANHGVERTYEIHKLSEEEALELFKWNAFKQTDKVDPSYENILKEAVVYASGLPLALEVIGSLLFGKSIQEWRSAIDRFKEIPSKEILDKLKISYDGLEENQQKIFLDISCCLKGYRLREIEEILSAHYGVCVKYDIGVLADKSLIKISYFVTMHDLIEEMGKEIVRQESPKEHGKRSRLWFHEDIIQVLEENTGTSEIEMIHLNSWLREEVKWDGEAFKKMKNLKTLIIRHTKFCKGPEYLPNSLRVLEWMVYPSPDLPPDFHPKNLSTCNLFGERLTSFEMHGSLKPSKFMNMRVLELDSCGGLTRIVDVSCFPNLEKLSFRYCGNLATIHNSVGFLHKLKLLDARGCYKIKEFPPLQLPSLQELHLSECSRLESFPAINVEMKYMTELDLFGTPIKEFPSAFRNLSGLQRLKLENEESVQQFVKSSILLMPQLAEIHVRTLQETIKKDSKVLSFRNWEFSDELLAFSLSWCANVKKLDLSKTNLTVVPEFIKECRFLQKIHLDGCKQLEEIRGIPPNLEYLSARECESLSPECRSMLLNQEVHEAGNTRFILPSPPTTGIPEWFEHQSMGGEISFWYCNNFPHIALCVVCPSRWEWGKLRKSVTMIINKKKFQYIEYCIALKDNINNSTDEDDMDCIDEDNMDCIDNSKDDDKIDCTDDGHYYTHLFHIRAENVWEWGEKGKQKVMRSVNSPFPKPLAGRKRKYKNEWNCVKVIINHHMPIKFGIHVLSGHIQFTNPAFTLRQQICSNERPSKYLNPEKSKSPLSNWWHNKLFLERSRSSVKEEN. 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05546 1101 Gene3D Ribonuclease Inhibitor 510 696 IPR032675 -
Seca9g05546 1101 Gene3D Ribonuclease Inhibitor 697 917 IPR032675 -
Seca9g05546 1101 Pfam C-JID domain 872 974 IPR045344 -
Seca9g05546 1101 SUPERFAMILY L domain-like 517 880 - -
Seca9g05546 1101 Gene3D - 327 412 IPR042197 -
Seca9g05546 1101 SUPERFAMILY "Winged helix" DNA-binding domain 399 504 IPR036390 -
Seca9g05546 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 422 IPR027417 -
Seca9g05546 1101 SMART till_3 15 130 IPR000157 GO:0007165
Seca9g05546 1101 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 741 IPR044974 GO:0006952
Seca9g05546 1101 Gene3D - 12 157 IPR035897 -
Seca9g05546 1101 PRINTS Disease resistance protein signature 269 283 - -
Seca9g05546 1101 PRINTS Disease resistance protein signature 363 377 - -
Seca9g05546 1101 PRINTS Disease resistance protein signature 672 688 - -
Seca9g05546 1101 PRINTS Disease resistance protein signature 193 208 - -
Seca9g05546 1101 Pfam TIR domain 21 156 IPR000157 GO:0007165
Seca9g05546 1101 SMART AAA_5 190 330 IPR003593 GO:0016887
Seca9g05546 1101 Pfam NB-ARC domain 173 398 IPR002182 GO:0043531
Seca9g05546 1101 Gene3D - 158 321 IPR027417 -
Seca9g05546 1101 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 132 IPR035897 -
Seca9g05546 1101 ProSiteProfiles TIR domain profile. 1 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05546 Seca-Chr9 163619477 163624456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05546 39 807 WRKY Transcription Factor Family AT4G12020 29.875 1.33e-77 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05546 - - gmx:100814962 1016.53