Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05545 ATGCCTCTGTTACCACCCTCCTCCTCCTCTTCATCCTTCACCTATGACGTGTTCCTCAGCTTCAGAGGCACCGATACTCGCCACAATTTCATTGGCTTTCTCTACAAAGCTCTTTGTGTCAAGGGAATCCGCACCTTTATTGATGATGAGGAGCTTCCAAGAGGAGATGAAATCACACCCTCACTTGTCAAGGCAATCAAAGAGTCCTGGATTGCCATTCCTGTATTCTCTGAGAACTATGCTTCTTCTTCTTTTTGCTTAGATGAACTTGTCAACATCATTGACCACGTCAAAGGGATGGGTCGGTTGGTTTTGCCTGTTTTCTACAAGGTCGATCCTTCTCATGTGCGCCATCAGACTGGGAGTTACGGAGAGGCACTAGCCAAGCATGAGGAAAGACTCACAAATAATATGGAGAGGTTGCACAAATGGAAGATGGCTCTTCAAAAAGCAGCTAACTTGTCCGGCATGCATTTCAAACTCGGGGATGAATATGAATACAAGTTTATTGAGAAGATCGTGGAAGAGATCTCCAACAAGATTAGTCGTCGCACTCCATTACTACATGTTGCTTATCACCCTGTTGGGCTAGAGTCTCGAATGCAAAAAGTAATGTCCCTTCTTGATGTTGAATCTGATGATAAAATTCTCATGGTAGGGATATATGGAATTGGCGGAATAGGTAAAACAACTCTTGCTCAAGCAGTTTATAATTCCATTACTGACTTATTTGGAAGTTTGTGTTTTGTTCATGATGTGAGAGAAAACTCAACTAAACATGGCTTAAAAGATCTCCAAGAGATGCTCCTTTCCAAAACAGTTGGTTTCAATAAGAAGCTAGGACACGTCAGTGAAGGGATTCCAATAATAAAAGAAAAGCTTTCGCAAAAGAAGGTTCTTTTAATTCTTGATGATGTTGACGATAAGAAGCAGTTGGAGGCTATGGTTGGAGAACCTAGTTGGTTTGGTCCTGGTAGCAGGGTCATCATTACCACTCGGGACAAACACTTGTTAGCAAATCATGGGGTTGAGAAAGTGTATAATATAGATGAGTTAAAGGAGGAGGAAGCTCTTGAATTGTTTAAGTGGAATGCATTTAAAAAAACTGACAAAGTTGATCCAAGTTATGAGAACATTCTAAAGGAAGCAGTAGCTTATGCTTCTGGCCTTCCGCTGGCTTTGGAAGTTATAGGTTCCCTTTTGTTTGGGAAAAACGTTCAAGAATGGAGATCTGCAATTGATAGGTTTAAAAAAACTCCTAGCGAAGAAATCCTAGACAAACTTAAAATAAGCTACAATGCTTTAGAAGAAAATCAACAGAAAATTTTTCTTGACATTTCTTGTTGCCTCAAAGGGTATAGTTTGGAAGAGATTGAAGAGATACTTTCTGCACATTACGGAGTCTGCGTGAAATATGATATTAGAGTTCTAGTTGATAAATCTCTCATAAAAATTGGTTTGAATCATTGGGGCTGGGAGGATTGTGTGATAATGCATGACTTGATAGAGGAAATGGGAAAAGAAATTGTTCGACAAGAATCACCGAAAGAGCTTGGAAAACGCAGTAGATTATGGTTTCATGAAGATATAATTCAAGTTTTAGAAGAAAATACTGGAACAAGTGAAACTGAAATGATATATCTAGTACGTTTTCGGTTGGGTGATGAAGTAGTAGAATGGGATGGCGAGGCTTTCAAGAAGATGAAAAACCTCAAAACACTTTCTATAGGTAATATGGAGTTTTGCAAAGGTCCAGAGTATCTTCCACACAACTTAAGAGTATTGGAATGGTCTGCATATCCTTCTCAGAGTTTGCCATTTGATTTTCATCCGAAGAATCTTTCTATATGCATCTTATACTGCAGTTGCCTCACATCATTTGAGATGCATGGGTCATTAAAGACGAGAAAGTTCATGAATATGAGAGTTTTAGTGCTTGACGAGAGTGAATGTTTAACAAGAATAGCGGACGTATCTTGTTTCCCAAATTTAGAAATGTTTTCATTTGAACATTGTGAGAATCTGGTTACAATACACAATTCAGTTGGGTTGCTGCATAAACTTAAATCCTTGAATGCTCGAGGTTGCAGCAAGATTAAGAAATTTCCACCCCTCCAGTTGCCGTCTCTTGAAAAACTCGATCTTTCATATTGCTCAAGCCTTGAGAGTTTTCCAGAAATATTAGTAAAGATGGAAAATATGAGAGAGCTTGACTTGGAAGGAACTCCCATAAAAGAATTCCCATCTTCATTTGGGAATCTTAGTGGGCTTCAAAGGTTAAGGTTGAACGATGAAGAAATTTTTCAGTTTGCAAAAAGTAGCATTCTTATGATGTCACAGTTGGCTGAGATTCATGTCAGTTTACCTATTTTTGCAACTATAAAAAAGGACGGAAGAAGACTAAACTTTATGTCTCGCAGCATTACAAATGAGTTTTTGACATTCAGTCTCACATGGTGTGCTAATGTGGAAGAATTATACTTACACAAAAGTGATCTCACAGTTGTTCCTGAATGCATCAAAGAATGCCGCTTTTTACGGAAGCTTGTTTTGGGTGGTTGCAAACAACTTGAAGAAATCAGAGGGATTCCACCCAGCCTACGGGAGATTTGTTTGAATGGATGTGAAAAACTTGAAGAAATCAGAGGGATTCCATTTCCACACAGCCTGCAATATTTATCTGCAACAGGATGCGTATCTTTGAGTATGTCATGTAGAAGCATGTTACTGAATCAGGAACTGCATAAGGCTGGAAACACACGCTTTATTTTGCCAAGCCCCGAAAGAGGGATACCAGAGTGGTTCGAGCACCAGAGCATTAGTGATGAAAGAGGGATACCAGAGTGGTTCGAGCACCAGAGGGAAACGCCAATTTCTTTCTGGTTTCGTAACAACTTCCCTCACATAGCTCTCTGTCTTTTTTCATTTGGGGAGTATCCATTTGTAGGTTATATACAGATCGTGTACATCAACTGCAAGCTATTTGACTATGAAGATTACAACGAACTTGACTCTACGGATGACTACAGTGACATTGACACTATAGGTTACGGCAATGACCCTACAGATAACCACAATATGCATTATACACAAATTATTCATATTAGAGCGAAAAATTTAGTGGGTAATGATTGTATTCTGGATGAAGCACTGTCAAAAAATGAATGGAACCATGTGAAGGTTATCATAGGAGCATACGATGAGCAAATCAGAATTGGAATTCATGTATTGAAAGAGAGAAGCAACAATATTCGATTCACCAATCCTTACGAAAAGACAATGGGTGGAAAAATGCTGGTCTCGGCTTCTTGA 3312 0.3913 MPLLPPSSSSSSFTYDVFLSFRGTDTRHNFIGFLYKALCVKGIRTFIDDEELPRGDEITPSLVKAIKESWIAIPVFSENYASSSFCLDELVNIIDHVKGMGRLVLPVFYKVDPSHVRHQTGSYGEALAKHEERLTNNMERLHKWKMALQKAANLSGMHFKLGDEYEYKFIEKIVEEISNKISRRTPLLHVAYHPVGLESRMQKVMSLLDVESDDKILMVGIYGIGGIGKTTLAQAVYNSITDLFGSLCFVHDVRENSTKHGLKDLQEMLLSKTVGFNKKLGHVSEGIPIIKEKLSQKKVLLILDDVDDKKQLEAMVGEPSWFGPGSRVIITTRDKHLLANHGVEKVYNIDELKEEEALELFKWNAFKKTDKVDPSYENILKEAVAYASGLPLALEVIGSLLFGKNVQEWRSAIDRFKKTPSEEILDKLKISYNALEENQQKIFLDISCCLKGYSLEEIEEILSAHYGVCVKYDIRVLVDKSLIKIGLNHWGWEDCVIMHDLIEEMGKEIVRQESPKELGKRSRLWFHEDIIQVLEENTGTSETEMIYLVRFRLGDEVVEWDGEAFKKMKNLKTLSIGNMEFCKGPEYLPHNLRVLEWSAYPSQSLPFDFHPKNLSICILYCSCLTSFEMHGSLKTRKFMNMRVLVLDESECLTRIADVSCFPNLEMFSFEHCENLVTIHNSVGLLHKLKSLNARGCSKIKKFPPLQLPSLEKLDLSYCSSLESFPEILVKMENMRELDLEGTPIKEFPSSFGNLSGLQRLRLNDEEIFQFAKSSILMMSQLAEIHVSLPIFATIKKDGRRLNFMSRSITNEFLTFSLTWCANVEELYLHKSDLTVVPECIKECRFLRKLVLGGCKQLEEIRGIPPSLREICLNGCEKLEEIRGIPFPHSLQYLSATGCVSLSMSCRSMLLNQELHKAGNTRFILPSPERGIPEWFEHQSISDERGIPEWFEHQRETPISFWFRNNFPHIALCLFSFGEYPFVGYIQIVYINCKLFDYEDYNELDSTDDYSDIDTIGYGNDPTDNHNMHYTQIIHIRAKNLVGNDCILDEALSKNEWNHVKVIIGAYDEQIRIGIHVLKERSNNIRFTNPYEKTMGGKMLVSAS. 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05545 1103 Gene3D - 351 436 IPR042197 -
Seca9g05545 1103 PRINTS Disease resistance protein signature 387 401 - -
Seca9g05545 1103 PRINTS Disease resistance protein signature 705 721 - -
Seca9g05545 1103 PRINTS Disease resistance protein signature 293 307 - -
Seca9g05545 1103 PRINTS Disease resistance protein signature 218 233 - -
Seca9g05545 1103 SUPERFAMILY L domain-like 512 909 - -
Seca9g05545 1103 Gene3D Ribonuclease Inhibitor 722 917 IPR032675 -
Seca9g05545 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 446 IPR027417 -
Seca9g05545 1103 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Seca9g05545 1103 Pfam TIR domain 15 182 IPR000157 GO:0007165
Seca9g05545 1103 Pfam NB-ARC domain 198 434 IPR002182 GO:0043531
Seca9g05545 1103 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 766 IPR044974 GO:0006952
Seca9g05545 1103 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 183 - -
Seca9g05545 1103 Gene3D - 8 182 IPR035897 -
Seca9g05545 1103 Gene3D - 183 346 IPR027417 -
Seca9g05545 1103 ProSiteProfiles TIR domain profile. 13 181 IPR000157 GO:0007165
Seca9g05545 1103 SMART till_3 14 154 IPR000157 GO:0007165
Seca9g05545 1103 Gene3D Ribonuclease Inhibitor 538 721 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05545 Seca-Chr9 163603723 163607514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05545 10 826 WRKY Transcription Factor Family AT4G12020 29.419 1.76e-83 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05545 - - gmx:100814962 1061.98