Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05542 ATGGTTAGTTGGTTACATAATTTATTAGTTTGTATTGCAGCTTTGCATTCTTGTTTGCTCTCGACACCACAGTACTGTCACTCCATCCATCCATATTCCAAATACTTACTACCCTTTCTTCTCATGGCTCTATTACCACCATCATCCTCCTCCTCCTCTTCATCCTTCACCTATGATGTGTTCCTCAGCTTCAGAGGCCCAGATACTCGCCACAATTTCATTGGCTTTCTCTACAAGGCTCTTTGTGACAAGGGAATCCACACCTTCATTGATGATGAGGAGCTTCCAAGAGGAGATGAAATCACACCAGCACTTATCAAGGCCATCAAAGAGTCCAGGATTGCCATTCCTGTATTCTCTGAGAACTATGCTTCTTCTTCATTCTGCTTAGATGAACTTGTCAACATCATTGACCATGTCAAAGGGACAAGTCAGTTGGTTTTGCCAGTTTTCTATAAGGTGGATCCTTCTCATGTGCGCCATCAGACTGGGAGTTATGGAGAGGCTTTGGCCAAGCATGAGGAAACATTCACAAATAATATGGAGAGGTTGCAGAAATGGAAGATGGCTCTTTATGAAGCAGCTAACCTGTCTGGCATGCATTTCAGACCCGAGGATGGATATGAATACAAGTTTATTGAGAAGATCGTGGAAGAGATCTCCAACAAAATTACAAGCAGTCCATTACTGCATGTTGCAGATCACCTTGTTGGGCTAGAGTGTCGAATGCATAAAGTAATGTCACTTCTAGATGTTGGATCTGTTCATGAAGTTCTCATGGTAGGGATCTATGGACTCGGAGGAATAGGTAAAACAACCCTTGCTCGAGCAGTTTATAATTCCATTGCTAACTCATTTGAAGGTTCATGTTTTCTTCATAATGTGAGAGAAAATTCAACTAAACAACGTGGCTTAGAGCATCTGCAAGAGGAGCTCCTTTCCAAAACAATTGGATTGAATGTGAAGCTAGGAGATGTCAGCGAAGGAATTCCAAAAATAAAGCAAAAGCTACAAAAAAAGAAGGTTCTTTTAATTCTTGATGATGTTGACAATGAAAAGCAATTGAAAGCTATGGTTGGAGAGCCTAATTGGTTTGGTGCTGGGAGCAAGATCATCATTACAACTCGGGAAAAACACTTGTTAGCAATTCATGGGGTTAAGAGAGAGTATAAAGTAGATGAGTTAAATGAGGAGGAAGCTCTTGAATTGTTTAAGTGGAATGCATTTAAAAAAATTGACAAAATTGATCCAAGTTATGAGAACATTTTAAAGGAAGCAGTAGCTTATGCTTCTGGCCTTCCGCTGGCTTTGGAAGTTATAGGTTCCCTTTTGTTTGGGAAAAGTATTCAAGAATGGAGATCTGCAATTGATAGGTTTAAAAAAATTCCTAGCAAAGAAATCCTAGACAAACTTAAAATAAGCTACGATGCTTTAGAAGAAAATCAAAAGGAAATTTTTCTTGACATTACTTGTTGCCTCAAAGGATGTAGTCTAAAAAAGATTGAAGAGATACTTTCTGCTCATTATGAAGTCGACGCGAAATATGATATTAGAGTGCTAATTGATAAATCTCTAATAAAGATTAATAAGTGGAATGGTGTCACAATGCATGATTTGATAGAGGACATGGGAAAAGAAATTGTTCGACAAGAATCACCAAATCAGCCTGGAAAACGTAGTAGGTTATGGTTTCATGATGATATAATTCAAGTTTTAGAAGAAAAGACGGGAACACATAAAACTGAAATGATACATCTAAAGTTTTGGTTGCGTGAAGAAGTAAAACCTGAAATAGAATGGGATGGCGAGGCTTTCAAGAAGATGAAAAACCTCAAAACTATTATTATAGAAAATACCAAGTTTTGCAAAGGTCCTGAGTATCTTCCAAACAGCTTAAGAGTATTGGAATGGAGGGAATATCCTTCTTTGGGTTTGCCATTTGATTTTCACCCGAAGCATCTTTCTATATGCAAGTTATTCGGGAGTTGCCTCACATCGTTTGAGATGCATGGGTCATTAAAAACGAGTAAGTTCATGAATATGAGAGTTTTAGAGCTTGTCAGATGCTATGATTTAACAAGAATAGGGGATGTATCTTGTTTCCCAAATTTAGAAAGTTTTTCATTTCGAAATTGTTGGAATCTAGTTACAATTCACAATTCAGTTGGGTTGTTGCATAAACTTAAATTCTTGGATGCTGAAGGTTGCAGTAAGATTAAGAAATTTCCACCCCTCCAGTTGCCGTCTCTTGAAGAACTCTGTCTTTCCGAATGCTCAAGCCTTGAGAGTTTTCCAGAAATATTAGTAAAGATGGAAAACGTAACATGGCTTGACTTGGAAGGAACTCCCATAAAAGAATTCCCATCTTCAATTCATGATGATCTTAGTGGGCTTCAAATGTTAAGTCTCAATGAAGAAACTGTTGTTCAGTTTGCAAAAAGTTTCATTTTCATGATGCCACAGTTGGCTGAGATTTCTATCAGTTTAGATGCAGAAGTAAAAAAGGACGGAGAATATCTGTTTCTCAGGGGCATCCGTTCAAATGAGTTTTTGACATTCTGTCTCACATGGTGTGCTAACCTGAAAGAATTAAAGTTATGGGATAGTGATATCACAGTTGTTCCTGAATGCATCAAAGAATGCAGCTTTTTACGGAAGCTTGTATTGAAAAATTGCAAAGAACTTGAAGAAATCAGAGGGATTCCACCCAGCCTACGGGAGACTTGTTTGAAAGGATGCTACAAACTTAAAGAAATCAGAGGGATTCCATTTCCACACAGCCTACAATATTTATCTGCAGTAGGATGCAAATCTTTGAGTTTGTCATGTAGAAACATGTTACTGAATCAGGAACTGCATAAGGCTGGAAAGACACGCTTTATTTTGCCAAGCCCAACAACAGGGATACCAGAGTGGTTTGAGCACCAGAGCAGGGGGGGGTCAATTTGTTTCTGGTTTCGTAACAACTTCCCTCACATAGCTCTCTGTCTTTATTCACCATATCATCATTATATAGACACCCTGTACATCAACGACAATAATTTTCATTATGAAAATGACTCTACACTTGAATGGTATAGAGCTGGCGACAGGATGGATCATACAGAAATTATTCATATTGGAGCGAAAAATTTAGTGGGTAAAGACTGTACTCTGGATGAAGCACTTTCAAAAAATGAGTGGAATAAGGTTATCCTTCGGGTCGCGTGGGGCCCAGAGCCAATGAGATTTGGAATTCATGCATTGAATGGGAGAAGCAGCGATATTCAAATCACCAATCCTTACAGAGAATGA 3294 0.3846 MVSWLHNLLVCIAALHSCLLSTPQYCHSIHPYSKYLLPFLLMALLPPSSSSSSSSFTYDVFLSFRGPDTRHNFIGFLYKALCDKGIHTFIDDEELPRGDEITPALIKAIKESRIAIPVFSENYASSSFCLDELVNIIDHVKGTSQLVLPVFYKVDPSHVRHQTGSYGEALAKHEETFTNNMERLQKWKMALYEAANLSGMHFRPEDGYEYKFIEKIVEEISNKITSSPLLHVADHLVGLECRMHKVMSLLDVGSVHEVLMVGIYGLGGIGKTTLARAVYNSIANSFEGSCFLHNVRENSTKQRGLEHLQEELLSKTIGLNVKLGDVSEGIPKIKQKLQKKKVLLILDDVDNEKQLKAMVGEPNWFGAGSKIIITTREKHLLAIHGVKREYKVDELNEEEALELFKWNAFKKIDKIDPSYENILKEAVAYASGLPLALEVIGSLLFGKSIQEWRSAIDRFKKIPSKEILDKLKISYDALEENQKEIFLDITCCLKGCSLKKIEEILSAHYEVDAKYDIRVLIDKSLIKINKWNGVTMHDLIEDMGKEIVRQESPNQPGKRSRLWFHDDIIQVLEEKTGTHKTEMIHLKFWLREEVKPEIEWDGEAFKKMKNLKTIIIENTKFCKGPEYLPNSLRVLEWREYPSLGLPFDFHPKHLSICKLFGSCLTSFEMHGSLKTSKFMNMRVLELVRCYDLTRIGDVSCFPNLESFSFRNCWNLVTIHNSVGLLHKLKFLDAEGCSKIKKFPPLQLPSLEELCLSECSSLESFPEILVKMENVTWLDLEGTPIKEFPSSIHDDLSGLQMLSLNEETVVQFAKSFIFMMPQLAEISISLDAEVKKDGEYLFLRGIRSNEFLTFCLTWCANLKELKLWDSDITVVPECIKECSFLRKLVLKNCKELEEIRGIPPSLRETCLKGCYKLKEIRGIPFPHSLQYLSAVGCKSLSLSCRNMLLNQELHKAGKTRFILPSPTTGIPEWFEHQSRGGSICFWFRNNFPHIALCLYSPYHHYIDTLYINDNNFHYENDSTLEWYRAGDRMDHTEIIHIGAKNLVGKDCTLDEALSKNEWNKVILRVAWGPEPMRFGIHALNGRSSDIQITNPYRE. 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05542 1097 Gene3D Ribonuclease Inhibitor 522 829 IPR032675 -
Seca9g05542 1097 ProSiteProfiles TIR domain profile. 56 224 IPR000157 GO:0007165
Seca9g05542 1097 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 58 766 IPR044974 GO:0006952
Seca9g05542 1097 FunFam Disease resistance protein (TIR-NBS-LRR class) 54 226 - -
Seca9g05542 1097 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 199 IPR035897 -
Seca9g05542 1097 SMART till_3 57 197 IPR000157 GO:0007165
Seca9g05542 1097 Pfam NB-ARC domain 243 465 IPR002182 GO:0043531
Seca9g05542 1097 Gene3D - 222 388 IPR027417 -
Seca9g05542 1097 SUPERFAMILY L domain-like 548 946 - -
Seca9g05542 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 489 IPR027417 -
Seca9g05542 1097 Gene3D - 394 479 IPR042197 -
Seca9g05542 1097 Gene3D Ribonuclease Inhibitor 837 959 IPR032675 -
Seca9g05542 1097 PRINTS Disease resistance protein signature 336 350 - -
Seca9g05542 1097 PRINTS Disease resistance protein signature 430 444 - -
Seca9g05542 1097 PRINTS Disease resistance protein signature 260 275 - -
Seca9g05542 1097 PRINTS Disease resistance protein signature 745 761 - -
Seca9g05542 1097 Gene3D - 50 221 IPR035897 -
Seca9g05542 1097 Pfam TIR domain 58 228 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05542 Seca-Chr9 163576283 163580096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05542 53 828 WRKY Transcription Factor Family AT4G12020 29.182 4.82e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05542 - - gmx:100814962 1023.46