LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g05541	ATGGCTCTGTTACCACCATCCTTCACCTATGATGTGTTCCTCAGCTTCAGAGGCATGGATACTCGCCACAATTTCATAGGCTTTCTCTACAAAGCTCTTTGTGACCAGGGATTCCGCACCTTCATTGATGATGAGGAGCTTCCAAGAGGAAATGAAATCACACCATCACTTGTCATGGCCATCAAAGAGTCCAAGATTGCCATTCCTGTATTTTCTGAGAATTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGTCAACATCATCGAGCAAGTCAAAGGGACGGATAGGTTGATTTTGCCAGTTTTCTACAAGGTCGATCCTTCTCATGTGCGCCATCAGACTGGGAGTTACAGAGAAGCACTAGCCAAGCATGAGGAAAGACTCACAAATAATATGGAGAGGTTGCAGAAATGGAAGATGGCTCTTCAAAAAGCAGCTAACTTGTCCGGCATGCATTTCAAACCCGGTTACTCTACTTCACTTCGGGATGAATATGAATATAAGTTTATTGAGAAGATTGTGGAAGAGATCTCCAACAAGATTAGTCATCGCACTCCATTACTACATGTTGCAAATCACCCTGTTGGGCTAGAGTCTCGAATGCAAAAAGTAATGTCCCTTCTTGATGTTGAATCTGATGATAAAGTTCTCATGGTAGGGATATATGGAATTGGCGGAATAGGTAAAACAACTCTTGCTCAAGCAGTTTATAATTCCATTACTGACTTATTTGGAAGTTTGTGTTTTGTTCATGATGTGAGAGAAAACTCAACTAAACATGGCTTAAAAGATCTCCAAGAGATGCTCCTTTCCAAAACAGTTGGTTTCAATAAGAAGCTAGGACACGTCAGTGAAGGGATTCCAATAATAAAAGAAAAGCTTTCGCAAAAGAAGGTTCTTTTAATTCTTGATGATGTTGACGATAAGAAGCAGTTGGAGGCTATGGTTGGAGAACCTAGTTGGTTTGGTCCTGGTAGCAGGGTCATCATTACCACTCGGGACAAACACTTGTTAGCAAATCATGGGGTTGAGAAAGTGTATAATATAGATGAGTTAAAGGAGGAGGAAGCTCTTGAATTGTTTAAGTGGAATGCATTTAAAAAAACTGACAAAGTTGATCCAAGTTATGAGAACATTCTAAAGGAAGCAGTAGCTTATGCTTCTGGCCTTCCGCTGGCTTTGGAAGTTATAGGTTCCCTTTTGTTTGGGAAAAACGTTCAAGAATGGAGATCTGCAATTGATAGGTTTAAAAAAACTCCTAGCGAAGAAATCCTAGACAAACTTAAAATAAGCTACAATGCTTTAGAAGAAAATCAACAGAAAATTTTTCTTGACATTTCTTGTTGCCTCAAAGGGTATAGTTTGGAAGAGATTGAAGAGATACTTTCTGCACATTACGGAGTCTGCGTGAAATATGATATTAGAGTTCTAGTTGATAAATCTCTCATAAAGAGTAATGGGGAGAATTATGTGGGAATGCATGACTTGATAGAGGAAATGGGAAAGAATATTGTTCAAAAAGAATCACGAGAAGAGCCCAGAGAACAAAGCAGGTTATGGTTTCATGAAGATATAATTCAAGTTTTAGAAGAAAATATGGGAACAAGTAAAATTGAAATGATATATCTATATCAAGGGTGGTTTTGGGAAGAAAAATTAGTAGTAAAGCTGGATGATGAGGCTTTCAAGAAGATGATAAACCTCAAAACACTTATCATATGGAATACAGAGTTTTGCAAAGGTACTGAGTATCTTCCAAACAGCTTAAGAGTATTGGAATGGACCGGATATCCCTCACCAAACTTGCCATTTGATTTTCATCCGAAGAAACTTTCTATATGCAACTTATCCCACAGTTGCCTCACATCATTTGAGATGCATGGGTCATTGAAAACGAGTAAGTTCATCAATATGAGAGTTTTAGAGCTTGATAGTTGCAGAGGTTTAACAAGAATAGCGGATGTATCTTGTTTCCCAAATTTAGAAAGACTTTCATTTGCATATTGTGAGAATCTAGTTACAATTCCCGATTCAGTTGGGTTGCTGCATAAACTTAAATACTTGAAAGCACGAGGTTGTGGTGAGATTAAGAAATTTCCACCCCTCCAGTTGCCGTCTCTTGAACAACTCGATCTATCCTGGTGCCTAAGCCTTGAGAGTTTTCCAGAAATATTAGTAAAGATGGAAAATGTGACAGAGCTTGACTTGGAAGTAACTCCCATAAAAGAATTCCCATCTTCACTTCGGAATCTTGGTGGGCTTCAAAGGTTAAAGCTGAAATATAGACGAGATCTCAGTACACTTATAAGAAAGGACAGTGAGGTTCTGTCTTTCAGAATCTGGAAATTTTCAGATCAACTTTTGGCATTCAATCTCATGTTGTGTGCTAATGTGGTGAAAGAATTGGACTTATCCAAAATTAAATTGACAGTTGTTCCTGAATGCATCAAAGAATGTCATTTTTTACAGAAGATTAATTTGGATGGATGCAAAAAACTTAAAGAAATTAGAGGGATTCCACCCAACCTAGAATATTTATCTGCAAGAGAATGTGAATCCTTGAGTCCCGAGTGTAGAAGCATGTTATTGAATCAGGAAGTGCATGAGGCTGGAAACACACGCTTCATTTTGCCAAGCCCCCCAACAGCAAAGATACCAGAGTGGTTCGAGCACCAGAGCATGGGAGAGGCAATTTCTTTCTGGTTTTGTAACAACTTCCCTCACATAGCTATTTGTGTTGTTTGTCCATCAGGATGGGAATGGGAAAAGTTGAGGGACTGTGTAATCATGATCATCAACAAGAAGGAATTTCAGTATACAGATGACAATGAAATTGACTGTATAGAATTGAAAGATAACGTCAACAACTCTACAGATGACGACATGGACTGTATAGATGAAGATGACATGGACTGTATTCATAACTCTAAAGATGAGGACAGAATTGATTGTACAGATGACGTCAACTACAGCCACTATTGTACACATGTTTTTCATATTCGAGCAAAAAATGTCTGGGAATGGGGAGAGAAAGGGAAGCAAGAAGTTAAAGGATCTATTAACTCCCCCTTTCCAAAGCCCTTAGCGGGAAGGAGGCGGAAATATAAAAAGGAGTGGAACTATGTGAAGGTTATCATAAACCACCATATGCCAATCAAATTTGGAATTCATGTATTCAAAGAAAGAAGTGGCCATATTCAATTTATCAATCCTGCATTTACTTTGCAGCAACAAATCTCCTCAAAATATCTAAACTCTAAATCGAAATCACCTTTGAGCAATTGGTGGCGCAATAAGTTGTTCCTATGA	3312	0.3841	MALLPPSFTYDVFLSFRGMDTRHNFIGFLYKALCDQGFRTFIDDEELPRGNEITPSLVMAIKESKIAIPVFSENYASSSFCLDELVNIIEQVKGTDRLILPVFYKVDPSHVRHQTGSYREALAKHEERLTNNMERLQKWKMALQKAANLSGMHFKPGYSTSLRDEYEYKFIEKIVEEISNKISHRTPLLHVANHPVGLESRMQKVMSLLDVESDDKVLMVGIYGIGGIGKTTLAQAVYNSITDLFGSLCFVHDVRENSTKHGLKDLQEMLLSKTVGFNKKLGHVSEGIPIIKEKLSQKKVLLILDDVDDKKQLEAMVGEPSWFGPGSRVIITTRDKHLLANHGVEKVYNIDELKEEEALELFKWNAFKKTDKVDPSYENILKEAVAYASGLPLALEVIGSLLFGKNVQEWRSAIDRFKKTPSEEILDKLKISYNALEENQQKIFLDISCCLKGYSLEEIEEILSAHYGVCVKYDIRVLVDKSLIKSNGENYVGMHDLIEEMGKNIVQKESREEPREQSRLWFHEDIIQVLEENMGTSKIEMIYLYQGWFWEEKLVVKLDDEAFKKMINLKTLIIWNTEFCKGTEYLPNSLRVLEWTGYPSPNLPFDFHPKKLSICNLSHSCLTSFEMHGSLKTSKFINMRVLELDSCRGLTRIADVSCFPNLERLSFAYCENLVTIPDSVGLLHKLKYLKARGCGEIKKFPPLQLPSLEQLDLSWCLSLESFPEILVKMENVTELDLEVTPIKEFPSSLRNLGGLQRLKLKYRRDLSTLIRKDSEVLSFRIWKFSDQLLAFNLMLCANVVKELDLSKIKLTVVPECIKECHFLQKINLDGCKKLKEIRGIPPNLEYLSARECESLSPECRSMLLNQEVHEAGNTRFILPSPPTAKIPEWFEHQSMGEAISFWFCNNFPHIAICVVCPSGWEWEKLRDCVIMIINKKEFQYTDDNEIDCIELKDNVNNSTDDDMDCIDEDDMDCIHNSKDEDRIDCTDDVNYSHYCTHVFHIRAKNVWEWGEKGKQEVKGSINSPFPKPLAGRRRKYKKEWNYVKVIINHHMPIKFGIHVFKERSGHIQFINPAFTLQQQISSKYLNSKSKSPLSNWWRNKLFL.	1104

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g05541	1103	Pfam	TIR domain	10	186	IPR000157	GO:0007165
	Seca9g05541	1103	SUPERFAMILY	L domain-like	557	890	-	-
	Seca9g05541	1103	SUPERFAMILY	"Winged helix" DNA-binding domain	424	531	IPR036390	-
	Seca9g05541	1103	Gene3D	-	352	437	IPR042197	-
	Seca9g05541	1103	Pfam	NB-ARC domain	199	435	IPR002182	GO:0043531
	Seca9g05541	1103	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	151	IPR035897	-
	Seca9g05541	1103	ProSiteProfiles	TIR domain profile.	8	182	IPR000157	GO:0007165
	Seca9g05541	1103	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	184	-	-
	Seca9g05541	1103	Gene3D	-	182	347	IPR027417	-
	Seca9g05541	1103	SMART	till_3	9	149	IPR000157	GO:0007165
	Seca9g05541	1103	Pfam	C-JID domain	882	954	IPR045344	-
	Seca9g05541	1103	Gene3D	Ribonuclease Inhibitor	478	869	IPR032675	-
	Seca9g05541	1103	PRINTS	Disease resistance protein signature	219	234	-	-
	Seca9g05541	1103	PRINTS	Disease resistance protein signature	294	308	-	-
	Seca9g05541	1103	PRINTS	Disease resistance protein signature	703	719	-	-
	Seca9g05541	1103	PRINTS	Disease resistance protein signature	388	402	-	-
	Seca9g05541	1103	Gene3D	-	6	181	IPR035897	-
	Seca9g05541	1103	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	841	IPR044974	GO:0006952
	Seca9g05541	1103	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	447	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g05541	Seca-Chr9	163558332	163562316	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g05541	10	849	WRKY Transcription Factor Family	AT4G12020	28.273	1.19e-79	285

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g05541	-		-	gmx:100814962	1013.83