Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05538 ATGTCTTCTGCCGGCGGCGGCGTTACCTCAGGCGAGCCTCGCCAATACTACTGCCACCAGTGCGAGCGCACTGTTTCCATTTCCCCGTCCTCCGGCGATCTTCTCTGCCCCAATTGCAACGGCGGCTTCCTCGAGGAACTCGAAAACCCAATCCCTAATTCTAACCCTAACCCTATCAATCCGTTATTCTCCTTCGCCACCGACTTCCCTGCCGCTGGCAACGCCACTGCAACCTTTCCCCTCGTCTTCTCCGGAGGCGCTCAACCTTTCGACGACTTCTCCGCCTTATTCGGCAACCGATCGTCGCCGCCATTCGGCGGGGACGCTGCTGAAGCGTTTAACCCGTTCGTGTTCCTCCAGAACTACGTCCAAACCCTAAGAGCTGGAGGCGCCAACGTCCAGTTCGTAATCGAGAACTCCGGCGACCCGACCGGAGCGTTCCGGATCCCCGGTAATGCGAACCCCGGTGATTACTTCTTTGGGCCGGGCCTTGAGGAGCTAATCCAGCAGCTCGCTGAGAACGACCCGAACCGCCGTGGGACCCCGCCAGCCTCGAAGTCCGCCGTCGAGGGGCTGCCGGACATTTCGGTGACGCAGGAGCTGCTTGCTTCAGATTCGGCGCAGTGCGCGGTGTGCAAAGATACCTTTGCCCTTGGTGAGACAGCGAAGCAGATGCCGTGTAAGCACATTTATCATGCAGATTGCATCTTGCCTTGGTTGGAATTGCACAATTCTTGCCCCGTTTGCCGCTACGAGTTGCCCACTGATGATGCGGACTACGAGCAGAGGGCTCGCCGCGGTGATGGGGCGCCTGCTCAGGTGAATTGGAACCTCGCCGCAGGGGCCGGTGGTTCCTCGGACTCTTCTAGTGGCAGTGGTGGCGGAGGTGGAGGCGGTGATAATTCACAGCGGAGGAGGTTTAGGGTGTCTTTGCCATGGCCCTTTAGGCAAATTACTTCTTCTGTTGCCGAGACTAGTAATGTTGGGAATGCCAACAACAACAACAGCAATAGCGGAAATAGTAGTGGGCAATCAAATCCTGAAAATAGGGGGAATCAGCATTTTGAGTCGGAGACCAGACAAGAAGATCTCGACTGA 1098 0.5719 MSSAGGGVTSGEPRQYYCHQCERTVSISPSSGDLLCPNCNGGFLEELENPIPNSNPNPINPLFSFATDFPAAGNATATFPLVFSGGAQPFDDFSALFGNRSSPPFGGDAAEAFNPFVFLQNYVQTLRAGGANVQFVIENSGDPTGAFRIPGNANPGDYFFGPGLEELIQQLAENDPNRRGTPPASKSAVEGLPDISVTQELLASDSAQCAVCKDTFALGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDADYEQRARRGDGAPAQVNWNLAAGAGGSSDSSSGSGGGGGGGDNSQRRRFRVSLPWPFRQITSSVAETSNVGNANNNNSNSGNSSGQSNPENRGNQHFESETRQEDLD. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05538 365 MobiDBLite consensus disorder prediction 278 304 - -
Seca9g05538 365 Pfam zinc-ribbon 15 47 IPR039525 GO:0061630
Seca9g05538 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 254 - -
Seca9g05538 365 FunFam E3 ubiquitin-protein ligase RING1-like 170 256 - -
Seca9g05538 365 Pfam Ring finger domain 208 250 IPR001841 -
Seca9g05538 365 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Seca9g05538 365 MobiDBLite consensus disorder prediction 318 365 - -
Seca9g05538 365 CDD RING-H2_RNF126-like 208 250 - -
Seca9g05538 365 MobiDBLite consensus disorder prediction 279 297 - -
Seca9g05538 365 SMART ring_2 209 249 IPR001841 -
Seca9g05538 365 MobiDBLite consensus disorder prediction 318 352 - -
Seca9g05538 365 SUPERFAMILY RING/U-box 195 256 - -
Seca9g05538 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 256 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05538 Seca-Chr9 163525155 163526252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05538 150 265 C3H Transcription Factor Family AT5G01980 52.586 8.21e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05538 K11982 - gmx:100818686 466.848