Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05532 ATGTCTGGTGGTTTGGACCTCGTCAAGCAGCTGTGTCCAGGGAGGCAAAATTGGAGGATCAAGGTTCGAGTGATTCGCCTATGGGACATGGCACCCATTGACCAGCCATCCCTCCCTTTCTCCATTGATATGGTTCTCATGGACTCGGAGGGAAATAGGATTCAAGCTACTGTAAGGAAGCCGATGATACAAAAATTCAGAGGTGTTATGATGGAGGGGCAGACGTATCGCATGGCGTACTTTGGCATCATCAACAACACTGGATTATTTCGTGCAGCTAGGCATGCATACAAGCTTCTGTTCCATAGCAGAACAAGGGTCATCCCGTGTGAGACCATGTCAGTTCCTTTGTACAGTTTAGCATTATCTGATTCTCAGGAAGTGTATGAAACAGGAGGGAAGTCTGATCATTTAGTTGATGTCATGGGCTTATTGACTGCTGTATCCGCTGAGAGATTGTCTGCCAGGGATGGCCGAACAACAAGACTTATTGTGATGGAGTTGTCTGATGAGAAGGGGAAAGTTAGGTGCACCGTGTTCAGGCCATATGTTGACATGATCAAGGAGTACCTATCGAGGGGTGTTGACGAGATGCCAGTGGTCATAGCGCAATTTGTTCGTGTGAATACTTACAAGGGTGATGTTGTCCTCCAGAATGTGATGAATACAACTAGAGTGTTGTGGAATCCAGATATACCAGAGGCGATTGATTTCAAAAGCTGCATGGTGGCTCTCGGGGTGGACCCATCTTCCTCGATTGGTGTTATAGGGGAGGCACAAGGGGAGCTTTCCATGCAGGAAGAATTCACCAAATTGTTTCCTAGGAAGTCAATTAACGAGCTCCACTCTACTGAGGAGGAGGGAGTTTTCATCGTCCTAGCAAGTATTTCTGCTGTTCTTTTCCAGGATATGTGGTGGTACAATGCATGTCGTTGCATGAAGACTGTCTCAGATGTCGACGACAAGTTCTTTTGCACTTCGTGCTGCACAAATGTCCTCGAAGTGACTCCTAGGTATAAGTTAAAGGTCGAAGTGTTCGATGGCGTTGACACTGCCACTTTTATTTTATTTGATGCTGATGCTGAGAAGCTGCTTGGAAAGCCATGTTCTGTGTTGGTGGCTGATGTCGTGGACCCCAAGGCAGCAGAATATCCGGGTGATTTCAACGTTGTTGTTGGAATGGAGCTCTTATTCAAGGTGTCAAAGCTGGCCGACCATGCATTTAGTTTTGATGACACATTCAGGGTGAAAAAGGTATGCAATGATCCTGGTATAATTTCTCTGGTGAAAAAGGTATGCATTTAG 1305 0.4605 MSGGLDLVKQLCPGRQNWRIKVRVIRLWDMAPIDQPSLPFSIDMVLMDSEGNRIQATVRKPMIQKFRGVMMEGQTYRMAYFGIINNTGLFRAARHAYKLLFHSRTRVIPCETMSVPLYSLALSDSQEVYETGGKSDHLVDVMGLLTAVSAERLSARDGRTTRLIVMELSDEKGKVRCTVFRPYVDMIKEYLSRGVDEMPVVIAQFVRVNTYKGDVVLQNVMNTTRVLWNPDIPEAIDFKSCMVALGVDPSSSIGVIGEAQGELSMQEEFTKLFPRKSINELHSTEEEGVFIVLASISAVLFQDMWWYNACRCMKTVSDVDDKFFCTSCCTNVLEVTPRYKLKVEVFDGVDTATFILFDADAEKLLGKPCSVLVADVVDPKAAEYPGDFNVVVGMELLFKVSKLADHAFSFDDTFRVKKVCNDPGIISLVKKVCI. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05532 434 Gene3D - 258 421 IPR012340 -
Seca9g05532 434 CDD RPA1_DBD_B_like 140 240 - -
Seca9g05532 434 SUPERFAMILY Nucleic acid-binding proteins 133 241 IPR012340 -
Seca9g05532 434 Pfam Replication factor-A C terminal domain 292 373 IPR013955 -
Seca9g05532 434 CDD RPA1_DBD_A_like 19 107 - -
Seca9g05532 434 PANTHER OS03G0429900 PROTEIN 7 402 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g05532 434 CDD RPA1_DBD_C 276 401 IPR047192 -
Seca9g05532 434 Gene3D - 114 245 IPR012340 -
Seca9g05532 434 Pfam Domain of unknown function DUF223 44 119 IPR003871 -
Seca9g05532 434 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Seca9g05532 434 Gene3D - 7 112 IPR012340 -
Seca9g05532 434 SUPERFAMILY Nucleic acid-binding proteins 274 406 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05532 Seca-Chr9 163420877 163424207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05532 11 389 Core DNA Replication Machinery Family AT5G08020 25.954 5.59e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05532 - - lja:Lj6g3v0884310.1 409.068