Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05531 ATGGTAGGTCACTCATTTGTATGTCATCTGCTAAAGGATGTTACTCTTAGTTCTGAGGGATGGACGATTAAAGCTTGTGTTAACCGAATGTGGGGTGTCTCTGATTATGTCTCTCCATTTGGTATTGCAAGTGTGGAGTTGGTCTTGATAGATTCCCAGGCAACAATTCCGAAGGAATATATAAAGGCCATTCAAAAGAATATAGTTGAGGAAGGTGTTTACTATTTTAAGAATATGGTTGTGTTGCCAAATAAAGGAACATACAAGCCCACGCAGCACATGTACAAACTGCTTTTTCAGCATAGGAGCCAGGTCATGGAAGGGGAACGTGATTTCATCAGCACTCTTGGCATTATCCCAATGAGTAACTGGCAAATAGTCAACTACAAAGCCTACTTTGACAATTTAGTTGATTTTGTTGGCGTCGTCACTGCTGTATCTCTCGAGAGGGATTATGTTCATGGTGGTGCTGTGAAGAAATATATTTGTTTGGAGATCACTGATCACACGGGCAAAGTTGAATGCATGTTATTTGAAGAGTATGTGTCATGTGTTAAAGAATTCATAAGGTGTTTTGGGCGTACTAAACCCATTGTTGCTGTCCAATATGCTAGGGTGGTCCCTGCTGCCGGCCCGGTTTTCGGTGAATTATTAATTCAAAACCATTTTACTGCCACACGCCTCCTGTTCAATCCAACCATTCCAACAATCGTTGACTTCAAGAACCGCATGAGTTGCATGGGCTTGAAGCTAGATGGATGCATTGGATCAACAACCACAAATGGAAGTGCGATGTCATTGGTTAATGATTTCTTAGTCTTACACCCAAGAAAAACTATTGGAGAATTGTTGTTTGCTGCAGAGTGTCGCACATTTGTTGTTCTAGCAACTGTAGTAAATATCATTGAGGATGGGAAGTGGTGGTATTTTTCTTGCAAGTGCAATCGGAGGGTTATGTCTGTGTCTGAGGTTTTTTATTGTCCAGGTTGTTGCAGAAGGGTTGTGAATGTCACTCCACGGTACGAATTAAAGATAAAGGTGTTCGACGGATTGTGTGATGTGTGTTTGATGATCTCTGATGGTGATCTCGAGAAATTGCTCCGTAGGCCATGCAAAGATGTAATGGATCAGGTTGAGGATCCCATTGCTACCAGATATCCAGCCATGTTTGGTGCATTGATAGGAAAAAAACTTCTTTTCAAGGTTGAAACTAAGTGTTCTCCTCCATCAAATGGACAATGTGTGCTTCCTGTTAGCCGTGTGTGTGATGACGATGGTATTATTGAGAAATTCGTCCATGGGGATACAATGGTTACATCCCACACTGATGGAGATTCACACAGGGTTTTCCTGGTGGCTCCTTCGTCTAAAGGGAAAGAAGTAGTTGTTGAGTCCAGTCCCGAAGGTTCACTTTTGAGTGAGGTTCCATTGAAGGGAACAGACCATGCAGATGGGACCATTGATCTTCTGGGAAATATGCTATCAGTAAACATGAAGGTTGAATGTGATGTAGGGTCTACTGCAGTGCATGATGCCTCGACCAGTAATACCTACTTTGGAGATGATATTGGAGATCTTAATCTTCGAATGTGA 1593 0.4206 MVGHSFVCHLLKDVTLSSEGWTIKACVNRMWGVSDYVSPFGIASVELVLIDSQATIPKEYIKAIQKNIVEEGVYYFKNMVVLPNKGTYKPTQHMYKLLFQHRSQVMEGERDFISTLGIIPMSNWQIVNYKAYFDNLVDFVGVVTAVSLERDYVHGGAVKKYICLEITDHTGKVECMLFEEYVSCVKEFIRCFGRTKPIVAVQYARVVPAAGPVFGELLIQNHFTATRLLFNPTIPTIVDFKNRMSCMGLKLDGCIGSTTTNGSAMSLVNDFLVLHPRKTIGELLFAAECRTFVVLATVVNIIEDGKWWYFSCKCNRRVMSVSEVFYCPGCCRRVVNVTPRYELKIKVFDGLCDVCLMISDGDLEKLLRRPCKDVMDQVEDPIATRYPAMFGALIGKKLLFKVETKCSPPSNGQCVLPVSRVCDDDGIIEKFVHGDTMVTSHTDGDSHRVFLVAPSSKGKEVVVESSPEGSLLSEVPLKGTDHADGTIDLLGNMLSVNMKVECDVGSTAVHDASTSNTYFGDDIGDLNLRM. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05531 530 SUPERFAMILY Nucleic acid-binding proteins 9 108 IPR012340 -
Seca9g05531 530 Gene3D - 119 250 IPR012340 -
Seca9g05531 530 Pfam Domain of unknown function DUF223 53 107 IPR003871 -
Seca9g05531 530 Gene3D - 9 109 IPR012340 -
Seca9g05531 530 Pfam Replication factor-A C terminal domain 293 405 IPR013955 -
Seca9g05531 530 Gene3D - 274 421 IPR012340 -
Seca9g05531 530 SUPERFAMILY Nucleic acid-binding proteins 275 406 IPR012340 -
Seca9g05531 530 CDD RPA1_DBD_C 292 405 IPR047192 -
Seca9g05531 530 CDD RPA1_DBD_A_like 22 105 - -
Seca9g05531 530 SUPERFAMILY Nucleic acid-binding proteins 134 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05531 Seca-Chr9 163410462 163413787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05531 20 376 Core DNA Replication Machinery Family AT5G08020 22.917 1.60e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05531 - - tpra:123908197 253.062