Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05510 ATGGATCACCTGGCTGATGATGACACATTGAGGAAACTATATCGAAAGATGGTTCATATGCTTCACCCTGATAATAACAAGTCCATTGGTGCAGATTGGGCCTTTAATCTAGTTTCAGAGGCATGGACCATACTATCAGATAATGCTAAAAGGGTAGCATATGATGACAAGATAAATGCAATGACTCAGGGGAAAACTGTTGAAGAGATTAGCAAGAAACCAAGTCAAATTAATACAGATTCTAATGACAAAACAACACTGAAAGAGATCACTGGAAATACCTACCAAAATGCAAATGAGGAAGGAGGAAAATCTATAAGAAACTAA 327 0.37 MDHLADDDTLRKLYRKMVHMLHPDNNKSIGADWAFNLVSEAWTILSDNAKRVAYDDKINAMTQGKTVEEISKKPSQINTDSNDKTTLKEITGNTYQNANEEGGKSIRN. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05510 108 PANTHER BNAC03G44070D PROTEIN 2 59 - -
Seca9g05510 108 Gene3D DnaJ domain 1 105 IPR036869 -
Seca9g05510 108 SUPERFAMILY Chaperone J-domain 3 58 IPR036869 -
Seca9g05510 108 CDD DnaJ 5 47 IPR001623 -
Seca9g05510 108 Pfam DnaJ domain 3 55 IPR001623 -
Seca9g05510 108 ProSiteProfiles dnaJ domain profile. 1 58 IPR001623 -
Seca9g05510 108 SMART dnaj_3 1 50 IPR001623 -
Seca9g05510 108 MobiDBLite consensus disorder prediction 72 108 - -
Seca9g05510 108 PRINTS DnaJ domain signature 14 29 IPR001623 -
Seca9g05510 108 PRINTS DnaJ domain signature 30 50 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05510 Seca-Chr9 162778038 162778364 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05510 6 59 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.741 9.13e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05510 - - tpra:123911521 96.2857