Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05507 ATGGAGTGCAATAAGGATGAGGCCATCAGAGCTAAAGAAATTGCTGAGAATAAGTTTGTTGCAAAGGATATTTTGGGAGCAAGAAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTAGTCTTGATGGTATTTCTCAATTGTTAACAGTAATTAATGTGTATAATTCTGCTACTAATGAAATAAATGGTAAAGTAGTCCTAAATTGGTATGGTATACTTGGTGTGGATCCCCTGGCTGATGATGACACATTGAGGAAACAGTATCGAAAGATGGTTCATATGCTTCATCCTAATAATAACAAGTCCATTGGTGCAGATTGGGCCTTTAAACTAGTTTCAGAGGCATGGAACATACTATCAGATAAGGCTAAAAGGGTAGCATATGATGACAAGATAAATGCAATGACTCAGGGGAAAACTGTTGAAGAGATTAGCAAGAAACCAAGTCAAATTCAGACAGATTCTAGTGACAAAACAACAGTGAAAGAGATCACTGGAAATACCTTCCAAAAAGAAAATGTGGACGGAGGAAAATCTGTAAAAAACTCAGATGGAAGAATTAATGGATCCGAAGCCATGAATTTATTTTCCGACACTATCACATATTTTGATATGGAGGACATGTTATCAATAGAAGCTCCAGATCCTCATTTCTATGATTTTGACAAGGATCGAATTGAAGGATCTTTTGGTGAAAATCAAGTATGGGCTTTATTTGATGAACAAGAAGGGATGCCTCGATATTATGCAATAATACACAATGTCATTTCTATGAATCCATTCAAGATGCTGTTCACCTGGCTCGACATGAAGAAGACTGAGGTTGAAAGGACCCCGACTCTGAATTGGGGTGCGTCACGCTTTCAAGAGCTTGTGGGAATTTCATAA 888 0.375 MECNKDEAIRAKEIAENKFVAKDILGARKFALKAQSLFPSLDGISQLLTVINVYNSATNEINGKVVLNWYGILGVDPLADDDTLRKQYRKMVHMLHPNNNKSIGADWAFKLVSEAWNILSDKAKRVAYDDKINAMTQGKTVEEISKKPSQIQTDSSDKTTVKEITGNTFQKENVDGGKSVKNSDGRINGSEAMNLFSDTITYFDMEDMLSIEAPDPHFYDFDKDRIEGSFGENQVWALFDEQEGMPRYYAIIHNVISMNPFKMLFTWLDMKKTEVERTPTLNWGASRFQELVGIS. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05507 295 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca9g05507 295 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca9g05507 295 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca9g05507 295 SUPERFAMILY Chaperone J-domain 65 133 IPR036869 -
Seca9g05507 295 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca9g05507 295 PANTHER BNAC03G44070D PROTEIN 1 287 - -
Seca9g05507 295 SMART dnaj_3 67 124 IPR001623 -
Seca9g05507 295 CDD DnaJ 68 121 IPR001623 -
Seca9g05507 295 Gene3D DnaJ domain 67 181 IPR036869 -
Seca9g05507 295 Pfam DnaJ domain 68 129 IPR001623 -
Seca9g05507 295 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca9g05507 295 Pfam Domain of unknown function (DUF3444) 210 286 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05507 Seca-Chr9 162738897 162739784 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05507 4 133 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.060 1.10e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05507 - - cpap:110823946 233.032