Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05497 ATGGAGTGCAATAAGGATGAGGCCATCAGAGCTAAAGAAATTGCTGAGAAGAAGTTTGCTGCAAAAGATGTTTTGGGAGCAAGGAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTGGTCTTGAGGGTATTTCTCAAATTTTAACAACACTTAATGTGTATATTTCTGCTACTAATGAAATAAATGGGAAAGTAATCCTAGATTGGTATGGTATACTTGGTGTGGATCCCTTGGCTAATGATGACACAGTGAGGAAACAATATAGAAAGCTGGTTCATATGCTTCACCCTGATAATAACAAGTCCATTAGTGCAGATTGGGCTTTTAAACTAGTTTCGGAGGCATGGAATATACTATCGAATAAGGCTATAAGGTTAGCATATGATAAGATGATCGAGGCAAGGACAGATGCTGAAGAGATTAGAAAGAAACCAAGTCAAATTAAGAAAGATTCTAATGACAAAACAATAGTAAAAGAGATCAGTGGAAATGACCACCAAAAAGCAAATAAGGAAGGAGGAAAATCTGTAACAAACTCAGATGGAAGAATGAATGGATTTGAAGCCATGAATTTATTTGCAGGCATTGCCACAAATAATGACATGAAGAACATGTTATTAATAGATGCCCCAGATCCTCATTTCTATTGTTTTAACTTGGATCGACTTAAAGGATCTTTTGGTGAAAATCAAGTATGGGCTGCATTTGATGAGGAAGAAGGGATGCCTCGATATTATGCAATGGTACACAATGTCATTTCTATAAATCCATTCATGATGCATTTCAGCTGGCTCAACATAAAGAAGACCAAGGGTGAAAGGACCTTTCTAATCAATCAGGGTGCTTCACGCTTTTCAAGAGCTTGTGGGAATTTCGAAATAGGAATATATGATATCACTGACACAAGCGTTTTCTTCTCTCACAAGGTGAGATGTAAAATTGGTAATGATGGAAGTATTTTTATATATCCCAGGAAAGGGGATGTTTGGGCCCTCTATAGAAATTGGTCTTCCAACTGGAATACACTAACACCTGATGAGGTGACACAAAAGTATGATATGGTTGAAGTACTTGATGTTTTCAATGATTTCATTGTTCTTCCTCTGGTCAAAGTAGCTGGTTTCAGGACAATATTTCGTCGTGATTTGGATTTGAGAAAAATCAGGGTCATTCCAAGGAAAGAAATATTGAGGTTCTCTCACCAGGTTCCTTCAACCATACTTAGTGGTGAAAAAGCTCCTGATGCCCCAAAGGGTTACCGGGAGTTGGACCCAACAGCTATTTCATCTGAACAATTTCAGGTAATCGAAGTTGTGAAGGACAAAGACATGGTTATGGTCAACAATGAGGATACTATAATTAAAGAAACAACAGGTGATAGCATGAAAGAAGCTGATAGTGAGGAAATGAACAATGATTCGGGAACACATGGGGATGGAAAGAAGAAGGTATTGAAACTATAG 1464 0.3777 MECNKDEAIRAKEIAEKKFAAKDVLGARKFALKAQSLFPGLEGISQILTTLNVYISATNEINGKVILDWYGILGVDPLANDDTVRKQYRKLVHMLHPDNNKSISADWAFKLVSEAWNILSNKAIRLAYDKMIEARTDAEEIRKKPSQIKKDSNDKTIVKEISGNDHQKANKEGGKSVTNSDGRMNGFEAMNLFAGIATNNDMKNMLLIDAPDPHFYCFNLDRLKGSFGENQVWAAFDEEEGMPRYYAMVHNVISINPFMMHFSWLNIKKTKGERTFLINQGASRFSRACGNFEIGIYDITDTSVFFSHKVRCKIGNDGSIFIYPRKGDVWALYRNWSSNWNTLTPDEVTQKYDMVEVLDVFNDFIVLPLVKVAGFRTIFRRDLDLRKIRVIPRKEILRFSHQVPSTILSGEKAPDAPKGYRELDPTAISSEQFQVIEVVKDKDMVMVNNEDTIIKETTGDSMKEADSEEMNNDSGTHGDGKKKVLKL. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05497 487 SUPERFAMILY Chaperone J-domain 67 132 IPR036869 -
Seca9g05497 487 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca9g05497 487 Pfam DnaJ domain 68 129 IPR001623 -
Seca9g05497 487 SMART dnaj_3 67 124 IPR001623 -
Seca9g05497 487 Pfam Domain of unknown function (DUF3444) 208 411 IPR024593 -
Seca9g05497 487 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca9g05497 487 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca9g05497 487 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca9g05497 487 MobiDBLite consensus disorder prediction 161 181 - -
Seca9g05497 487 MobiDBLite consensus disorder prediction 456 487 - -
Seca9g05497 487 CDD DnaJ 68 121 IPR001623 -
Seca9g05497 487 PANTHER BNAC03G44070D PROTEIN 1 428 - -
Seca9g05497 487 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca9g05497 487 Gene3D DnaJ domain 67 184 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05497 Seca-Chr9 162538594 162540057 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05497 4 129 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.231 2.75e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05497 - - lja:Lj2g3v0520120.1 322.013