Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05486 ATGAAATTCGTTGTCGTCTCCGGCATTGTCATTGCCTCCAGCGGCTCAGATAAGACCATCCACCTCCAGCGTCACGAATGGCTGCTCCCTCAATCTCTCCGTTCCGTTCCATCGTTTAAAATCCGATCCCTCTTTGTCTTTGAATGGAGTGATGGCTTGATTGGAAGCAAAGGAAGTGGCGCCAGAGCGCCGCTGCGATGGGGAGTGAACAACAACCAGAGGCGGCGGCTTGAGAGTCTTGAACGGAACCTAATAGAGGAATTAGTTATTAATTCAGAGAGTCCAAGACTGAGTCTACAAGAGGTAGGAGCTGAGTTTATAGGGACATTCATTCTCATATTTGCTGGGACAGCAATCGCTATTGTGAACCAAAAGACACAAGCCTCTGAGACTCTGATTGGATGTGCTGACTCTACTGGTCTTGCTGTTATGATTGTCATCCTCTCCACTAGCCACATCTTCTATGCTAATCTTAACCCTGTCGTTTGA 489 0.4765 MKFVVVSGIVIASSGSDKTIHLQRHEWLLPQSLRSVPSFKIRSLFVFEWSDGLIGSKGSGARAPLRWGVNNNQRRRLESLERNLIEELVINSESPRLSLQEVGAEFIGTFILIFAGTAIAIVNQKTQASETLIGCADSTGLAVMIVILSTSHIFYANLNPVV. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05486 162 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca9g05486 162 PRINTS Major intrinsic protein family signature 139 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca9g05486 162 PANTHER AQUAPORIN NIP2-1 83 162 IPR034294 -
Seca9g05486 162 Gene3D Glycerol uptake facilitator protein. 63 162 IPR023271 -
Seca9g05486 162 Pfam Major intrinsic protein 98 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca9g05486 162 SUPERFAMILY Aquaporin-like 100 162 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05486 Seca-Chr9 162011104 162012575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05486 79 162 Major Intrinsic Protein MIP AT1G80760 61.176 5.49e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05486 K09874 - atr:18447007 98.5969