Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05462 ATGCACTTGACTATAAGTACATATTTGGATGGTGCATCAGAGTTCTCTGTTGAGGAGGATCTGGATGGTGTAGTCCCTGATGTTAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGTAGGATTTTCAATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTGGGATGTTCTTGCAAGGATGTTTTGGCTGCTGCTCACAAACAATGTGCTGAGGCTTGGTTTAAGATCAAGGGCAACAAGAAAGCTGAGTTCTATCTCCCATGGAAGTGCGAGAATGAGCGCCACTCCTATGAGAAGTGCGAGTACGAGCTTGTCATGGAGAGGATGCTTTAG 348 0.4626 MHLTISTYLDGASEFSVEEDLDGVVPDVKVHLAKVERDCRIFNLSMDMTNHESGTPIELGCSCKDVLAAAHKQCAEAWFKIKGNKKAEFYLPWKCENERHSYEKCEYELVMERML. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05462 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
Seca9g05462 115 PANTHER ZINC FINGER, RING-CH-TYPE 34 88 - -
Seca9g05462 115 Pfam RING-variant domain 50 86 IPR011016 GO:0008270
Seca9g05462 115 Pfam NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) 71 114 IPR008698 GO:0005739
Seca9g05462 115 SMART ringv_2 38 86 IPR011016 GO:0008270
Seca9g05462 115 ProSiteProfiles Zinc finger RING-CH-type profile. 31 105 IPR011016 GO:0008270
Seca9g05462 115 SUPERFAMILY RING/U-box 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05462 Seca-Chr9 161721457 161722125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05462 12 88 C3H Transcription Factor Family AT5G05830 64.935 2.15e-27 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05462 - - gmx:100816407 125.561