Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05457 ATGCTGAGAAGGTCAACAACAGAGGCTTTTGTGCTATTGCTCAAGATGAGTCTCTCCGCTACGTACAAGATCTTTGGTGGCCTTGCTGTAAGGAGGGCCTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAATTGAGCCCAGAGAGCAAAATTCGTGAAGTTCAAGGATGGGTACATGATTTATTTTGGGCAACCTGTCAAGGATTGCATTGA 249 0.4498 MLRRSTTEAFVLLLKMSLSATYKIFGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLSPESKIREVQGWVHDLFWATCQGLH. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05457 82 Pfam Ribosomal protein S3, C-terminal domain 23 62 IPR001351 GO:0003735|GO:0006412
Seca9g05457 82 SUPERFAMILY Ribosomal protein S3 C-terminal domain 21 60 IPR036419 -
Seca9g05457 82 Gene3D - 15 70 IPR036419 -
Seca9g05457 82 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 18 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05457 Seca-Chr9 161577203 161577451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05457 19 57 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 89.744 4.64e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05457 K02985 - tut:107359679 75.8701