Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05456 ATGTTTGATGAAATGTTCAAGACGCAAAAATTCATCGCTGATGGTGTTTTCTTCGTTGAACTGAACGAGGTTCTAACTAGAGAGCTCGTCGGGGATGGTTACTCTGGTGTGGAGATCAGGGTTACCCCGGTGCGCACAGAAATCATCATCAAAGCCACTCGAACGCAGGCTGTTCTTGGTGAGAAGGGAAGGAGAATTAGGGAACTTGCCTCAGTGGTACAAAATAGGTTTAGGTTTCCTTAG 243 0.4609 MFDEMFKTQKFIADGVFFVELNEVLTRELVGDGYSGVEIRVTPVRTEIIIKATRTQAVLGEKGRRIRELASVVQNRFRFP. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05456 80 Pfam KH domain 20 77 IPR004044 GO:0003723
Seca9g05456 80 CDD KH-II_40S_S3 7 80 - -
Seca9g05456 80 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 9 80 - -
Seca9g05456 80 FunFam 40S ribosomal protein S3 1 80 - -
Seca9g05456 80 Gene3D - 1 80 IPR015946 -
Seca9g05456 80 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 79 IPR009019 GO:0003723
Seca9g05456 80 ProSiteProfiles Type-2 KH domain profile. 21 80 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05456 Seca-Chr9 161576944 161577186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05456 1 80 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 75.000 1.10e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05456 K02985 - gmx:100795581 129.798