Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05454 ATGGCCTTCAAGTGGAAGTATGATGTATTCTTGAGCTTCAGGGGTGTTGACACTCGCATGAGTTTCACAAGCCATCTCTATAATGCTCTAGTACAAAAGGGTGTTAATACTTTCATAGACTACAAGGAGCTCAAAAGGGGAGAGACGATTTCACCTGCACTTTGTAGAGCTATTGAAGACTCAAGGATCTCAGTGGTGATATTGTCTCAAACTTATGCTTCTTCCACTTCTTGCTTAGATGAACTCCTTAAGATACTTGAGTGTAAGAATTCCAAGGGTCAACTGGTCCTGCCAGTCTTTTATCATGTGAATCCATCTCAAGTTAGAGAACAGAAGGGGAGTTTTCAACAAACTTTGGCTAAACAAGAAGACAAATTCAGGGATGACATGGACAAGGTAAAAAGGTGGAGGGCAGCTCTATGTGAAGTAGCTACTTTGTCTGGGTGGCACCTTGGAGATGGGCAGGAATCTAAGTTTGTCCAAAGAATTGTTGAAGAAATATTGAGTAAGCTGAACCCCACACTTCTCAATGTTGCCAAACATCCTGTTGGATTGAATTCACCTTTGGAAGATATTAAATCACTTTTGGACACCAGATTAGATGATGTGCAGCCTATAGGACTTTATGGAATTGGTGGGATAGGGAAGACAACACTTGCTAAGGCTGTTTATAATGATATTGCCAATCAGTTTGAGGGCAGTGCCTTCATTGCAAATGTTAGAGAAATCTCAAGTAAAAGATTTGGCATAGTTCAACTCCAAGAAGCACTTCTTTCAGAGATTTTGAACCATAGAGATTTTAAAATAGGGAACAAGGATAGAGGAATTGATCTGATAAAGAATAGGCTTTGTAGTAAAAAGGTTCTCATAGTTGTTGATGATGTTGATTCACTGGAGCAACTTGAATCATTGGTTGGAGAGTATAATTGGTTTGGACCAGGAAGTAGGATCATCATAACAACTAGAGATGAGCACTTGCTGATTGCTCACAATGTGGAAACAGCCTACAAGGTCAAGGAATTAAGTCATGGAGATGCTCTTGAACTTTTTAGTTGGTTTGCTTTCAAACAACCCTGTCCTCCAACAAATTATGAAGAACTGTCCTCACACATATTAAACTATGCTAAAGGCTTGCCATTGGCACTAACAGTTTTGGGGTCTTACCTATGTGGTAGGGACAAAGCAGAGTGGATAAGTGCATTAGCGAAACTGAAAAAAATTCCAAATAAACAGATTTATGAAATACTCAAAATCAGCTTTGATGGGTTGGAGGAGAATGAAATGGCCATATTTCTGGATATTGCATGCTTCTTTAAGGGAGAGGACAAAGAGTATGTGAAAATGATACTAGACAGTTGTGACCTGCACTCAGATAATGGAATAGGAGTTCTAGTGGATAAGTCTCTTGTTACTGTAGAATTGAACAAACTTTGGATGCATGACTTGCTAGAGGAAATGGCTAAAGAAATTGTTCGCCGTGAATCCCCCAAAGAGCCTGGTAAACGTAGCAGACTCTGGTTTCATGAGGATGTTCTTCATGTATTGAACCAAAATATGGGAACTAATAACATTGAAGGAATAAGGCTAGATCTACCTGAACCAGATAAGGTTGACATAAATGGCAAAGCCTTGGAAAATATGAAAAGACTTAGACTTCTCATGATCAATAATGCAAATGTTTCAGATGATATTCAATATCTATCCAATGAGCTAAGATTAATTGATTGGCCGGGGTACCCTTCTTCAACTCTACCACCAGATTTCCATCCAAAGAGACTTATATTCAAAGACTTGAAACTTGTATCCTTTAGCTGCTGTCAATACCTCACTGAAATACCAGACTTCTCAATGATTCCAAACCTTGAGAATCTGAGCTTGGACCATTGTAAAAGTTTAACTAAGGTGCATGAGTCTGTGGGGTCTCTTGATAAGCTTGTTACTTTAAACTTCCTATTATGCTCCAATCTCAAGGCTCTTCCAAGTCATTTCAAGTTAAAATCCCTGCGTACTCTTCTCCTTACTGGCTGCTCAAAGGTTAGAAAGTTTCCTGAGATTGTTGACAAAATGGAACATCTTGAAGAAATCCTTCTCCAAGGGACTTCCATTAAAGAACTACCACAATCAATTGAACATCTAATTGGGCTAAAAGTTTTACTCTTAGATTCTTGCCAAAAGCTTGAGCATCTTCCAAGTAGCATTCAGAATTTGCAATACCTTACTGAACTTGATCTCACTAACTGCTCAAAGCTCAGGGAGCTTCCAAAGCTTCCACTGAATACAAGATATATAGACACAAGTAATTGCAGATCATTGGAAAGGTTTCCAACATTGTCCTTCCAATCAAATTTTAGTGCACAGGAATTCCCAAGGTTTTCTCAAATGATGTTCACTAACTGCCATAAACTGATTAATAAACAGGTCCAAGAGCACATAACAAATCTGTTTTACAATGAGGTTGGTTCTAAATGCTCACTTTCTTTGTCTCTCTGTGTGTTCTTCCTGCAAAATATTCAGAAACTAAAATTAGTTTTTATGCTTCAGGAATTTATTAAAGAAGTTATGCTTCCAGGGAACAGTATCCCAGATTGGTTTCATCATCAGAGTACTAATGGTTCAATTTCTCTTGAGGTAGCTTCAAGGTTGTATGGTAAGCCTGTGGAATTGTTTTTTGGTGCAGTTTTTGAGGTAGACAAAGGTGCTACAAAAACTGGTATATTTTCATGTGTATATGAGGTAATCACCAATGATGAAAAGACACTTATAATAGCAAGAAAATTTGAATCATTGGAATCTAGTCATGTGTGGCTGACTAGGATCAATCCTGGTCGTTTGATGTGGCGCCTCAATAGTATGAATTATTGGAATCACTTTAGGATTTCATTTGTGATCTCTGAAGTGTCATCAAAGGAGAAAGTAAAAGCATCCTTGAAATGTTGTGGTTTCCATGTTTCGTGCAAGCAAGAAAGGTATCTGATTGATCATGAAACAGTTAGGAGGTACACAGGGTAA 3009 0.3825 MAFKWKYDVFLSFRGVDTRMSFTSHLYNALVQKGVNTFIDYKELKRGETISPALCRAIEDSRISVVILSQTYASSTSCLDELLKILECKNSKGQLVLPVFYHVNPSQVREQKGSFQQTLAKQEDKFRDDMDKVKRWRAALCEVATLSGWHLGDGQESKFVQRIVEEILSKLNPTLLNVAKHPVGLNSPLEDIKSLLDTRLDDVQPIGLYGIGGIGKTTLAKAVYNDIANQFEGSAFIANVREISSKRFGIVQLQEALLSEILNHRDFKIGNKDRGIDLIKNRLCSKKVLIVVDDVDSLEQLESLVGEYNWFGPGSRIIITTRDEHLLIAHNVETAYKVKELSHGDALELFSWFAFKQPCPPTNYEELSSHILNYAKGLPLALTVLGSYLCGRDKAEWISALAKLKKIPNKQIYEILKISFDGLEENEMAIFLDIACFFKGEDKEYVKMILDSCDLHSDNGIGVLVDKSLVTVELNKLWMHDLLEEMAKEIVRRESPKEPGKRSRLWFHEDVLHVLNQNMGTNNIEGIRLDLPEPDKVDINGKALENMKRLRLLMINNANVSDDIQYLSNELRLIDWPGYPSSTLPPDFHPKRLIFKDLKLVSFSCCQYLTEIPDFSMIPNLENLSLDHCKSLTKVHESVGSLDKLVTLNFLLCSNLKALPSHFKLKSLRTLLLTGCSKVRKFPEIVDKMEHLEEILLQGTSIKELPQSIEHLIGLKVLLLDSCQKLEHLPSSIQNLQYLTELDLTNCSKLRELPKLPLNTRYIDTSNCRSLERFPTLSFQSNFSAQEFPRFSQMMFTNCHKLINKQVQEHITNLFYNEVGSKCSLSLSLCVFFLQNIQKLKLVFMLQEFIKEVMLPGNSIPDWFHHQSTNGSISLEVASRLYGKPVELFFGAVFEVDKGATKTGIFSCVYEVITNDEKTLIIARKFESLESSHVWLTRINPGRLMWRLNSMNYWNHFRISFVISEVSSKEKVKASLKCCGFHVSCKQERYLIDHETVRRYTG. 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05454 1002 Pfam NB-ARC domain 190 413 IPR002182 GO:0043531
Seca9g05454 1002 PRINTS Disease resistance protein signature 205 220 - -
Seca9g05454 1002 PRINTS Disease resistance protein signature 375 389 - -
Seca9g05454 1002 PRINTS Disease resistance protein signature 734 750 - -
Seca9g05454 1002 PRINTS Disease resistance protein signature 282 296 - -
Seca9g05454 1002 Gene3D - 340 424 IPR042197 -
Seca9g05454 1002 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 173 - -
Seca9g05454 1002 Pfam TIR domain 6 177 IPR000157 GO:0007165
Seca9g05454 1002 FunFam Disease resistance protein (TIR-NBS-LRR class) 342 424 - -
Seca9g05454 1002 Gene3D - 173 336 IPR027417 -
Seca9g05454 1002 Gene3D - 3 172 IPR035897 -
Seca9g05454 1002 SMART till_3 6 146 IPR000157 GO:0007165
Seca9g05454 1002 SUPERFAMILY "Winged helix" DNA-binding domain 411 515 IPR036390 -
Seca9g05454 1002 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 149 IPR035897 -
Seca9g05454 1002 Pfam C-JID domain 855 988 IPR045344 -
Seca9g05454 1002 Gene3D Ribonuclease Inhibitor 663 819 IPR032675 -
Seca9g05454 1002 SUPERFAMILY L domain-like 492 848 - -
Seca9g05454 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 782 IPR044974 GO:0006952
Seca9g05454 1002 SMART AAA_5 202 345 IPR003593 GO:0016887
Seca9g05454 1002 ProSiteProfiles TIR domain profile. 5 171 IPR000157 GO:0007165
Seca9g05454 1002 Gene3D Ribonuclease Inhibitor 512 662 IPR032675 -
Seca9g05454 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05454 Seca-Chr9 161561146 161565651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05454 7 754 WRKY Transcription Factor Family AT4G12020 32.443 5.89e-107 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05454 - - ccaj:109793662 1528.07