Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05444 ATGGACAGTCAACTCTCCTCCCCTTTCTTCACCTACAAGTTCGACGTGTTCCTCAGCTTCAGAGGTGAAGATACACGCTACGGTTTTAGTGGTAATCTCTACAAAGCTCTCAGTAACAGGGGAATTCACACCTTCATTGACTATGAGGAGCTTCAGAAAGAGGGCGAAATCACACCGTCCCTTCTCCAGGCTATTAGAGAGTCCAAGATTGTCATTATCGTGTTCTCTGAGAACTATGCTACGTCTTCATTTTGCTTGGATGTACTTGTCTACATCATTGACAACTTTCAATCTCAGATGCAAATTGTTTTTCCTGTCTTTTACAACGTGGATCCTTCTGAGGTGAGAAAACAAATAGGGGCTTATGGTGAGGCAATGGCCAAACATGAGGTGAGGTTCAAGGATGACATTGAGAGAGTGCAGAAATGGAGGTACGCCCTGAGTCAAGCAGCTAACTTGTCTGGCTGGCATTTCAATCCTGGGGAGGGGTACGATGAATACCAGCTTATTGAGAAGATTGGGGAAGATATCTCCAGCAGGTGTGATCATGCTGGTCCTTTACATGTTGCTGATTACCCGGTTGGACTAGACTCTCGAGTGCGAGAAGTGTGCTCGCTTCTGGAGTTTGGATATGACGATAGAGTACTCATGGTAGGGATCTATGGAACTGGCGGAGTAGGTAAAACAACACTTGCTAGAGCGGTCTATAACATGATTGCTCACCAGTTTGAAGGTTTGTGTTTTCTTAATGATGTGAGAGAAGTGTCAGACAAACATGGATTAATACGTCTCCAAGAGAGACTTCTTTATGACGTTACTGGAGAAAAGGTTATTCGACTAGGAGATGTCAGTGAGGGAGTTTCAATAATAAAGCATAGGCTCCATCGAAAGAAAGTTCTTTTGATCCTAGACGACGTGGACAAAATTGAGCAATTGGAGGCCTTTGTTGGAGGACCTCATTGGTTTGGTCCAGGTAGCAGAATTATCTTTACAACTAGGGACAAACATTTGCTAGCATTTCATGGGGTTGAAAGAATGTACGAAGTTGAAACTTTAAATGACAGAGACGCTCTTGAACTGCTTAGCTACATGACATTTAGACAAGGCAGTGTTGATCCAAGTTATACAGAACTTTTAAACCAAGCAGTAACTTATGCTTCTGGGCTTCCATTGGCTTTGGAAGTAATAGGTTCCTGCTTGTTTGGAAAAAGTGTGGACGAATGGAGATCTGTATTAGCTCGATTTAACAAGATTCCTCTTCGTTACATCCAAAATATCCTTGAAGCAAGCTTTGATGCTTTGAGTGAAGGTGAACAGAATGTTTTTCTTGACATTGTCTGTTGCTTTAAAGGATATGAATTGGCAGAAGTTGAGGATATACTTCATGCTCATTATGGTTACAACGTGAAACATTATATTAAGGTGTTGGTTGAAAAATCTCTCATAAGTATTAGTTTGGATGGTAAGGTGACAATGCATCCCTTGATAGAAGCCATGGGTAAAGAAATTGTTCGACAAGAATCACCGCTACAACCTGGAAAACGCAGTAGATTATGGTACCCTGAAGATATAGTTCAAGTATTAGAAGACGATACGGGAACTAGTGAAATTGAAGTCATACATCTGGATTTCACCTTAATTGATGAAAAGGAAGTAGAAGTAGAATGGGATGGATATGCCTTCAAGAAGATGAAAAACCTCAGAACACTTATTATTAAAAACTGTCATTTCTCCATAGCTCCCAAATATCTTCCTAGTAGTTTAAGGGTATTGGAATGGTTGGCATATCCTTCAGAGGAGTTACCACCTCATTTTCATCCAAAGAAACTGGCCAGGTTGAAGTTACCAAACAATCGCATTATGTCACCCAACCTTTCCGAGTTACTGGAGAATTCTGTTAGATTCGCGAACAAACTTAGATTCTTGGATGGTAAGGAATGTAGCAAGCCTGTTAGCAAGCTTAGAACTTCTCTTGAACATCTCTATCTTCCAAATTGCTGCGAGTCTTAA 2010 0.4104 MDSQLSSPFFTYKFDVFLSFRGEDTRYGFSGNLYKALSNRGIHTFIDYEELQKEGEITPSLLQAIRESKIVIIVFSENYATSSFCLDVLVYIIDNFQSQMQIVFPVFYNVDPSEVRKQIGAYGEAMAKHEVRFKDDIERVQKWRYALSQAANLSGWHFNPGEGYDEYQLIEKIGEDISSRCDHAGPLHVADYPVGLDSRVREVCSLLEFGYDDRVLMVGIYGTGGVGKTTLARAVYNMIAHQFEGLCFLNDVREVSDKHGLIRLQERLLYDVTGEKVIRLGDVSEGVSIIKHRLHRKKVLLILDDVDKIEQLEAFVGGPHWFGPGSRIIFTTRDKHLLAFHGVERMYEVETLNDRDALELLSYMTFRQGSVDPSYTELLNQAVTYASGLPLALEVIGSCLFGKSVDEWRSVLARFNKIPLRYIQNILEASFDALSEGEQNVFLDIVCCFKGYELAEVEDILHAHYGYNVKHYIKVLVEKSLISISLDGKVTMHPLIEAMGKEIVRQESPLQPGKRSRLWYPEDIVQVLEDDTGTSEIEVIHLDFTLIDEKEVEVEWDGYAFKKMKNLRTLIIKNCHFSIAPKYLPSSLRVLEWLAYPSEELPPHFHPKKLARLKLPNNRIMSPNLSELLENSVRFANKLRFLDGKECSKPVSKLRTSLEHLYLPNCCES. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05444 669 CDD AAA 194 334 - -
Seca9g05444 669 SMART till_3 13 153 IPR000157 GO:0007165
Seca9g05444 669 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Seca9g05444 669 ProSiteProfiles TIR domain profile. 12 181 IPR000157 GO:0007165
Seca9g05444 669 SMART AAA_5 214 353 IPR003593 GO:0016887
Seca9g05444 669 PRINTS Disease resistance protein signature 386 400 - -
Seca9g05444 669 PRINTS Disease resistance protein signature 293 307 - -
Seca9g05444 669 PRINTS Disease resistance protein signature 217 232 - -
Seca9g05444 669 PRINTS Disease resistance protein signature 562 578 - -
Seca9g05444 669 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 156 IPR035897 -
Seca9g05444 669 Gene3D - 11 184 IPR035897 -
Seca9g05444 669 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 667 IPR044974 GO:0006952
Seca9g05444 669 SUPERFAMILY L domain-like 556 666 - -
Seca9g05444 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Seca9g05444 669 Gene3D - 185 344 IPR027417 -
Seca9g05444 669 Pfam TIR domain 13 179 IPR000157 GO:0007165
Seca9g05444 669 Gene3D - 351 435 IPR042197 -
Seca9g05444 669 Gene3D Ribonuclease Inhibitor 528 669 IPR032675 -
Seca9g05444 669 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 183 - -
Seca9g05444 669 Pfam NB-ARC domain 206 434 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05444 Seca-Chr9 161391139 161393934 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05444 14 666 WRKY Transcription Factor Family AT4G12020 29.985 2.90e-73 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05444 - - gmx:100814962 764.992