Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05441 ATGGCACATTCCCCTTCTTCCTTCAACCATGGTTGGACTTTTGATGTGTTTGTGAGCTTCCACGGGGAAGATACTCGTTACAATTTCACAGGCAATCTTTGTCATGCCTTATACCAAAAGGGAATTAACGCTTTCAAAGATGACATCAAGCTTAAGAAAGGAGAAGGGATTTCACCAGCTCTTCTCAGAGCAATTGATGGGTCTAGGATTGCCATAATTGTTTTCTCAGAAAATTATGCATCCTCATCTTGGTGTCTTGATGAATTAGTGAGGATCATAGAGTGCATGAAAAAGAAAGGACAATTAGTTTGGCCAGTTTTCTACTATGTTGACCCTTCACATGTAAGGCATCAGAGGGGAAGTTTTGCAGAGTCATTGAGGTATGAGTTTGAATTAATTCAAAGGATTACAGAAGAAATATCTAGCAAATTGAATATTACATGCTTGCACATAGCTAATCATCCAGTTGGATTGAATTATCGAATGTCAGAAGTGTTGTCATTTCTAAAAATCAGATCTAATGATGTTCGCATGGTTGGAATTTATGGTATTGGTGGCATTGGTAAAACAACAATTGCTCGAGCTGTGTATAACTCAATTGCTAGTAAGTTTGATGGCTCAAGTTTTCTTGCTGATGTCAGAGAAAACTCAATGAAGCATGGTCTAGTACAACTACAAGAGACCCTTCTACTTCATTTGCTTGGAGAAAACATCAAGTTGAGTGATGTGAATGAAGGAATTCCTATAATAAAAAGAAGGCTTCTTAGCAAGAAGGTTCTTTTGATTCTTGATGATGTGAATGATTTGCAACAATTGCAATCATTGGCTGGAAGACATGATTGGTTTGGTTTTGGAAGTAGAATTATCATAACAACAAGAGATAAACAATTGTTAGCTACTCATGGGGTTGAAGAAACATATGAAGTGAAAGAACTGAATGATCATGAAGCTCTTGAGCTATTTAGTTTTAATGCTTTTAAAAGAAAGGAACCTGATGCAAGTTATGTGGAGATAACAAACCGAATAGTAAAATATGCCAAAGGCCTTCCATTAGCTTTGAATGTCATAGGATCTGATTTGTATGGAAAAACAATAGAAGAATGGGAAAGTGCACTAAAGAAATATGAAACAATCCCAAGCAAAAAGATTATAGATGTCCTTAAAGTAAGCTATGATAATTTGGATGATAATGAAAAAGAAATTTTCCTTGATATTGCATGTTTCTTCAAGGGAAATTTGAGAGAGGATGTAGAAAAGACATTAGATGCCTCTCGTTTTCAATCAAGATATGGCATTGGAGTACTTATTGACAAATCTCTAGTAAAAATTAGTGAATCCAATACACTTAAGATGCATGATCTTATACAAGACCTGGGCAGAGACATTGCTAGAAAGGATTCACCATTTGACCCTAGTAAACGCAGAAGACTATGGCATCATGAGGATGTGCCACCATCATTCTCATCTTCCTTCAGTTACGGATTCACCTACGATGTGTTCCTCAGCTTCAGAGGCAAGGATACTCGCCAGGGTTTTATTGGCAATCTCTACAAAGCTCTTGTTGACAGGGGAATACGCACCTTCATTGACGACGAGGACCTTCAGAGAGGGGACGAAATCACACCGTCACTTGTTAGGGCAATTGAAGAGTCCAGGATTGCCATCCCTGTGTTCTCTAACAACTATGCTGCTTCTTCATTTTGCTTAGATGAACTTGCCAAGATATTTGAGTGCTTCAAGAGGAAGGGTCGGTTGGTTTTGCCAGTGTTTTATGATGTAAATCCTTCTCATGTGCGACATCAGACTGGGAGTTATGGAGAATCACTAACTAAACATGAAGAGAGGAATGAATATGAACATGAGTTTATTGGGAAGATAGTTAAAGAGGTCTCCAACAAGATCAACCGTGTCCCTTTGCATGTTGCGGATTGCCCAGTTGGACTGGAGCGTCGCGTGTTAGCAGTAAAGTCGCTTCTGGATGTTGGATCTGATGATGGAGTCCACTTGGTAGGGATCTGTGGAATTGGAGGAATGGGTAAAACGACACTTGCTCGAGCAATTTATAATTTGATTGCTGACCTATTTGAAGGTTTGTGTTTTCTTGATGACGTGAGAGAACAGTCAATTAAACATGGATTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTCTATAAAGGGATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGATTCTTTTAATTCTTGACGATGTTGACAAACTTGAACAGTTGCGGGCAATCGTTGGAGGGACTAACTGGTTTGGTTCTGGTAGCAGAATCATCATAACAACTCGAGACAAACATTTGCTAGCAAGTCATGGGGTTGAGAGAAAATATGAGGTGGAGGAATTTAACGAGGAAGAAGCACTTGAATTGCTTAGCTGGAATGCTTTTAAAAAGGACAAATTTGATCCAAGATACAAGGACATTGTAAACCAAGTAGTAGCTTATGCTTCTGGCCTTCCGTTGGCTTTAGAAGTAGTAGGTTCGCTCTTGTTTGGGAAGAATATAAAAGAATGGGAATCTGCATTAGATCAATATAAAAAAATTCCTAATAAAAAGATCCAAGATATACTTAAGGTAACCTTTAATGCTTTAGAGGAAGACCATCAGAAAGTTTTTCTTGACATTGTTTGTTGCTTGAAAGGATATGAATTGGAAGAGGTTGAAGATATACTTTGCGCTCATTATGGTGTCTCCATGAAATATGGTATTGGAGTGTTGGTTGATAAATGTCTCCTACAGATTAGGAATGGTTGTGTGACATTTCATGAATTGATAGAGGTCATGGGTAAAGAAATTGATCGTCAGGAATCGCCAAAAGAGCTTGGGAAGCATAGAAGGTTATGGTTCCACAAAGATATACTTCAAGTTTTAGCACAAAATATGGGGACTAGTGAGATTGAAATCATACATCTGGATTTCCCTTTATTTGAAGAAGATGAAGAAGTATTAGTAGAATGGGATGGAGAGGCCTTCAAGATGATGAAAAATCTCAGAACACTCATTATTAGAAATTGTCATTTTTCCAGAGGTCCCAAATATCTTCCAAATAGTTTAAGAGTATTAGAGTGGTGGCCATATCCTTTACAGGATTTACCATATGATTTTCATCCAAACAAACTTACCATATGCAAGTTACCCGAAAGTTGCTTTACATCGCTTGAGTTAGCAAGCAAGTTCGTGAATCTAAGAGTCTTGAATTTTGATGGGACTGATTGTTTAACTCAGATACCTGATGTATCTGGTCTCCCAAATTTAGAAAAAATGTCATTTGAATGTTGTGAAAATTTAGTTACGATTCATGATTCGGTTGGGTTCTTGGATAAACTTAAAATCTTGAGTGCTTTTGGTTGCACCAAGCTAAGGAGTTTTCCACCCATTAAGTTGACCTCTCTTGAAGAACTCAAACTTTCATCTTGTACAAGTTTGGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATGACACGGCTTGAGTTGAAGCACACTCCAATAATAGAATTGCCATTTTCTTTTGGAAATCTTACTCGGCTTCGAGATTTAGCACTGCTTGACTGTGAAAATATTCAATTGCCAAGTAGTATTGTCATGTTGCCAGAACTAGCTGAGATTTTTGCTATGGAATGCAAAGGATGGCTATTACCAAAACATGACAAGGGTGAAGAAAAAGTGAGCTCAATGTCTTCAAATGTAAAATGTCTTTGTCTCTCAGGCTGCAATCTGTCAGATGAATATTTTCCCATAATTTTCACATGGTTTCCTAACATGAAAGAGTTAGAGCTATCAGGCAATAATTTTACATTTCTTCCTGAATGCATCAAAGAATGTCACACTTTAACATTGCTTAATTTGGATAATTGTGAGCGTCTTCGAGAAATTAGAGGGATTCCGCCAAATTTGGAATATTTCTCTGCAGGAAATTGCAAATCCTTGACTTTTTGGTGTACAAGCATGTTACTGAATCAGGGACTGCATGAGGCTGCAAACACCATGTTTTGTTTGCCAGGAGTAAGGATTCCAGAGTGGTTCAATCACCACGGCACAGGACCTTCAATTTCTTTCTGGTTTCGTAAGCAGTTTCCAGCCATAGTGCTCTGTTTTGTTGTTGGACCGATGGGTAAGGACACTATTTTGTTTAGACCCATCTTGACCGTCAATGGCAATGCAATGAAGATAGAGTTATTAACTGAAAAAAGGGTTTGTTTTGACTTCCCAGCATTAACTGATCATATACTTATTATTGGTACAAGATACATGAAGTTTGAAGATAATCAGGATAAAGTATTTTCAGAAAATGAATGGAATAATGTGGTGGTCTCTATTGGTATTGATTTTGAACCTATCCCAAAGGAAATAGTTGTCAAAGGAACTGGACTCCATGTAATCAACCAAAAAAGTAACATGGACGATATCCGATTCACTGATCCTTATAACCAATCATTTCTGAAAGAAAAGCATAAATTGGTGGACATTGGAGATTCTCATAGACAATTTATGCAGTTGCAAACAAATTTGGTTTCATTGGAACCGCATGTGGGACTGGACAGAGAGTCACTTCCATTGCTTCCGTCTTCAGCATTCAACAATAATGTGAATTGGCATTCGAATTCAACACAGATGAGTAGCACAACCAGTGTCCAAGGCCATGAAATTGCATCGCAAAAGAGAAAAATAAGTGAATTAAGGTTGGACATGGGAGTTTTACAATTTGTGCAGCAGCGTAAAAGATTGGCTTCGCTGGGTTTATTGCAACAACATGGCAGGGCTTCATTGGGTTTGTTGGATCGGCGGGGCAAAGAGCGGCTTTCATTGCTTCCATCTCTAGCATTCAACGATAATGTAAATTGGCATTCAAATTCAACATGGATAAGTAGCACCACCAATGTCCAACGCCATGGAGTTGTGCCACAAAAGAGAAAAGCTGGTGAATTATGGCTGGACATGGGGGTTTTACAATTTGTGCAGCAGCAGGAATGA 5043 0.3813 MAHSPSSFNHGWTFDVFVSFHGEDTRYNFTGNLCHALYQKGINAFKDDIKLKKGEGISPALLRAIDGSRIAIIVFSENYASSSWCLDELVRIIECMKKKGQLVWPVFYYVDPSHVRHQRGSFAESLRYEFELIQRITEEISSKLNITCLHIANHPVGLNYRMSEVLSFLKIRSNDVRMVGIYGIGGIGKTTIARAVYNSIASKFDGSSFLADVRENSMKHGLVQLQETLLLHLLGENIKLSDVNEGIPIIKRRLLSKKVLLILDDVNDLQQLQSLAGRHDWFGFGSRIIITTRDKQLLATHGVEETYEVKELNDHEALELFSFNAFKRKEPDASYVEITNRIVKYAKGLPLALNVIGSDLYGKTIEEWESALKKYETIPSKKIIDVLKVSYDNLDDNEKEIFLDIACFFKGNLREDVEKTLDASRFQSRYGIGVLIDKSLVKISESNTLKMHDLIQDLGRDIARKDSPFDPSKRRRLWHHEDVPPSFSSSFSYGFTYDVFLSFRGKDTRQGFIGNLYKALVDRGIRTFIDDEDLQRGDEITPSLVRAIEESRIAIPVFSNNYAASSFCLDELAKIFECFKRKGRLVLPVFYDVNPSHVRHQTGSYGESLTKHEERNEYEHEFIGKIVKEVSNKINRVPLHVADCPVGLERRVLAVKSLLDVGSDDGVHLVGICGIGGMGKTTLARAIYNLIADLFEGLCFLDDVREQSIKHGLVHLQEMLLSEIVGEKDIKIGSVYKGISIIKHRLHRKKILLILDDVDKLEQLRAIVGGTNWFGSGSRIIITTRDKHLLASHGVERKYEVEEFNEEEALELLSWNAFKKDKFDPRYKDIVNQVVAYASGLPLALEVVGSLLFGKNIKEWESALDQYKKIPNKKIQDILKVTFNALEEDHQKVFLDIVCCLKGYELEEVEDILCAHYGVSMKYGIGVLVDKCLLQIRNGCVTFHELIEVMGKEIDRQESPKELGKHRRLWFHKDILQVLAQNMGTSEIEIIHLDFPLFEEDEEVLVEWDGEAFKMMKNLRTLIIRNCHFSRGPKYLPNSLRVLEWWPYPLQDLPYDFHPNKLTICKLPESCFTSLELASKFVNLRVLNFDGTDCLTQIPDVSGLPNLEKMSFECCENLVTIHDSVGFLDKLKILSAFGCTKLRSFPPIKLTSLEELKLSSCTSLESFPEILGKMENMTRLELKHTPIIELPFSFGNLTRLRDLALLDCENIQLPSSIVMLPELAEIFAMECKGWLLPKHDKGEEKVSSMSSNVKCLCLSGCNLSDEYFPIIFTWFPNMKELELSGNNFTFLPECIKECHTLTLLNLDNCERLREIRGIPPNLEYFSAGNCKSLTFWCTSMLLNQGLHEAANTMFCLPGVRIPEWFNHHGTGPSISFWFRKQFPAIVLCFVVGPMGKDTILFRPILTVNGNAMKIELLTEKRVCFDFPALTDHILIIGTRYMKFEDNQDKVFSENEWNNVVVSIGIDFEPIPKEIVVKGTGLHVINQKSNMDDIRFTDPYNQSFLKEKHKLVDIGDSHRQFMQLQTNLVSLEPHVGLDRESLPLLPSSAFNNNVNWHSNSTQMSSTTSVQGHEIASQKRKISELRLDMGVLQFVQQRKRLASLGLLQQHGRASLGLLDRRGKERLSLLPSLAFNDNVNWHSNSTWISSTTNVQRHGVVPQKRKAGELWLDMGVLQFVQQQE. 1681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05441 1680 SUPERFAMILY Toll/Interleukin receptor TIR domain 487 629 IPR035897 -
Seca9g05441 1680 SUPERFAMILY "Winged helix" DNA-binding domain 873 979 IPR036390 -
Seca9g05441 1680 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 497 1212 IPR044974 GO:0006952
Seca9g05441 1680 SMART AAA_5 175 331 IPR003593 GO:0016887
Seca9g05441 1680 SMART AAA_5 666 795 IPR003593 GO:0016887
Seca9g05441 1680 SMART till_3 13 154 IPR000157 GO:0007165
Seca9g05441 1680 SMART till_3 496 633 IPR000157 GO:0007165
Seca9g05441 1680 ProSiteProfiles TIR domain profile. 495 634 IPR000157 GO:0007165
Seca9g05441 1680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 897 IPR027417 -
Seca9g05441 1680 Gene3D - 804 887 IPR042197 -
Seca9g05441 1680 Gene3D - 311 395 IPR042197 -
Seca9g05441 1680 Gene3D - 636 800 IPR027417 -
Seca9g05441 1680 Gene3D - 152 308 IPR027417 -
Seca9g05441 1680 Gene3D - 11 151 IPR035897 -
Seca9g05441 1680 Pfam NB-ARC domain 161 391 IPR002182 GO:0043531
Seca9g05441 1680 Pfam NB-ARC domain 652 873 IPR002182 GO:0043531
Seca9g05441 1680 Gene3D - 492 635 IPR035897 -
Seca9g05441 1680 PRINTS Disease resistance protein signature 1148 1164 - -
Seca9g05441 1680 PRINTS Disease resistance protein signature 838 852 - -
Seca9g05441 1680 PRINTS Disease resistance protein signature 745 759 - -
Seca9g05441 1680 PRINTS Disease resistance protein signature 669 684 - -
Seca9g05441 1680 Pfam TIR domain 14 128 IPR000157 GO:0007165
Seca9g05441 1680 Pfam TIR domain 497 617 IPR000157 GO:0007165
Seca9g05441 1680 SUPERFAMILY "Winged helix" DNA-binding domain 381 484 IPR036390 -
Seca9g05441 1680 SUPERFAMILY L domain-like 1005 1339 - -
Seca9g05441 1680 ProSiteProfiles TIR domain profile. 12 144 IPR000157 GO:0007165
Seca9g05441 1680 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 129 IPR035897 -
Seca9g05441 1680 Gene3D Ribonuclease Inhibitor 996 1351 IPR032675 -
Seca9g05441 1680 FunFam Disease resistance protein (TIR-NBS-LRR class) 494 636 - -
Seca9g05441 1680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 405 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05441 Seca-Chr9 161295159 161323712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05441 8 481 WRKY Transcription Factor Family AT4G12020 28.827 3.45e-51 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05441 - - gmx:100814962 1733