Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05440 ATGGCCGGTCGATCCTCCTCCTCCTCTTCCTTCACCTACGACGTGTTCCTCAGCTTCAGAGGCTCAGATACTCGCCACGGTTTTACTGGCTTTCTCTGGAAAGCTCTTTGTGACAGGGGAATTCACACCTTCGTTCACGATGAGGTGCTTGAGAGTGGGAACGAAATCACACCGTCACTTGTCAAGGTCATTGAAGAGTCCAGGGTTTCCATTATCGTCTTCTCTGAGAACTATGTTGCGTCTTCATTTTGCTTGGATGTACTTGCCTATATCCTTGATAACCTTCAGTTTCAGAGGAATCATCGATTTGTTTTTCCTGTCTTTTACCACGTCGATCCTTCTGATGTGCGCCATCAGAGAGGGACTTATGGTGAAGCATTGGTTATGCATGACAAGAAGTTCAAGGCTAACAACACGAAAGTGCAGAAATGGAGGAACGCTCTCAATGAAGCAGCTAATTTGTACGGATGGCATTTCAAACCCGGCGGGGATGGATATGAATTCGAGTTTATTGGGAGGATTGTGGAAGAGGTCTCGAGTAAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCTGTTGGACTGGAGTCTCCATTGCGAGAAGTGTGTTCACTTCTAGAAGTTGGATATGATGATAGAGTCCTCATGGTTGGGATCTATGGAATTGGTGGAATTGGTAAAACAACACTTGCTGGAGAAGTTTTTAATTTGATTGCTCGCCAATTTGAAGGTTTATGTTTCCTTGATCATGTGAGAGAAAATTCAAATAAACATGGATTAATGCACCTCCAAAATATGCTTCTTTCGGAAATAATTGGAGAGAAATATATTCAATTAGGAAATGCCAAAAAAGGAGTTTCAATAATAAAGCATAGGCTCCATCAAAAGAAAGTTCTTTTAATTCTAGATGATGTAGACAGACTAGAGCAATTGGAGGCCTTGGTTGGAGGACCTGATTGGTTTGGTTCAGGTAGCAGAATTATCATTACAACTCGGGACAAACATTTGCTGGCATTTCATGGGGTTGAAAGAGTATACAAGGTAGAAGAGTTAAATGACAGAGATGCTCTTGAATTGCTTAGCCGCAAGGCTTTTAGACGAGGCAATATTGATCCAAGTTACAAAGAAATTTTACACCAGGTAGTAACTTATGCTTCTGGGCTTCCATTGGCTTTGAAAGTAATAGGTTCCAACTTCTCTGGGAGAAGTGTGAACGAATGGAGACATGCATTAGATCAATATAAATTGATTCCTCATCATGAGATCCAAAAGATCCTTAAAGCAAGCTTTGATGCTTTGAGTGAAGGTGAGCAGAATGTTTTTCTTGACATTGCTTGTTCCTTCAAAGGATATCAATTGGAAGAAGTTGAGGATATACTTCATGCTCATTATGGTTATGACATGAAACATTATATTAGAGTGTTGGTTGAAAAATCTCTCATAAGTATTAGTTCAGATTGTAATGTAACACTACATCCCTTGATAGAAGACATGGGTAAAGAAATTGTCCGACGGGAATCACCGGAAGAACCTGGGAAACGCAGTAGGTTATGGTTCCCTAAAGATATAGTTCAAGTTTTAGAAGAAAATACGGGAACTAGTAGAATTAAAATCATACATTTGGATTTCCCCTTAACTGATGAAAAAGAAGCAGAAGTAAAATGGGATGGAGAGGCCTTCAAGAAGATGGAAAATCTCAGAACACTTATTATTAAAAAATGTCATTTCTCCAAAGCTCCCCTACATCTTCCTAATAGTTTAAGAGTATTGGAATGGTTGACATATCCTTCAGGGGAGTTACCATCTGATTTTCATCCAAAGAAACTTGCCATGTTGAAGATACCAAATATTCGCTTTATGTCACCTGAGCTTGCTGAGTTATTGAAGGCAATTCATATATCTGAGAGCTTTAATTATGACTACAGTCAGTGTATGACACAGTTCCCAAGTAGCATTGTCATGTTGAAGTTTTATAGATGTGATGGGTTGCGATCATCTAAACAGGATGGAGATGAAAAACTTAGGGTTCCTGAAATTTTGCCGACTTCACAAAGTGTTCCCGAAGTTTTGCAGACTTCTCAGAGGTTTCTTCAAGTTACAATGCAAACTTCACAGAGACTTTTTCAAGCCAAGATGATGTGGAGACTTGTTGGCTTTGTGTCAAGTGTAGTTGGCCTATTATGTTATGCTCTGAGCCCTTCTTTCAATCGTTTGATTGGAGGGTGGAATATTTTCAAGTTATTTCTTTACGTGGTGTTGTCCTTGGTTGTCTGTGCCACCATATTATTTGCAAAGCAATCTTCACTGTTAACACAGCATGTTCAGCTCCAAATGTGCATGAGCTCTGCTGTTTTGATAATTATCTCTGTGTACTCATTCTTTTATGACAAAGCCGTAAGCGGGAGACCTGAAACTCTAAGCTTGGTCTCAAATGCTGCATTTGCTTTGGTGTCATTGAGCTTGTCCAGGCTGATTCAGTTTCGCTTTGACATGGGTATATTCTCTTATTTCGTAGGCTGCCTTACAATTCAACTAGTGACCATCAACTGGAAGCTGATTTTAGTTGCAATAATCTTTGGTTGTCCACTCTTAATTATGCATTCCTTTTCGGATTGCCGGCTGAAGGCTGGAGGTCAAGTTATTCATTCATATTCAGATTCCCAACCAGATACTGGTGATGAAGGCCATGTTGTTCATTCCTCTTTGAATTCTCAGCCAGAGGTTGGTAGGTTTGGTCAACATGTCATAGATATTCATACGTGA 2766 0.3999 MAGRSSSSSSFTYDVFLSFRGSDTRHGFTGFLWKALCDRGIHTFVHDEVLESGNEITPSLVKVIEESRVSIIVFSENYVASSFCLDVLAYILDNLQFQRNHRFVFPVFYHVDPSDVRHQRGTYGEALVMHDKKFKANNTKVQKWRNALNEAANLYGWHFKPGGDGYEFEFIGRIVEEVSSKINRAPLHVADYPVGLESPLREVCSLLEVGYDDRVLMVGIYGIGGIGKTTLAGEVFNLIARQFEGLCFLDHVRENSNKHGLMHLQNMLLSEIIGEKYIQLGNAKKGVSIIKHRLHQKKVLLILDDVDRLEQLEALVGGPDWFGSGSRIIITTRDKHLLAFHGVERVYKVEELNDRDALELLSRKAFRRGNIDPSYKEILHQVVTYASGLPLALKVIGSNFSGRSVNEWRHALDQYKLIPHHEIQKILKASFDALSEGEQNVFLDIACSFKGYQLEEVEDILHAHYGYDMKHYIRVLVEKSLISISSDCNVTLHPLIEDMGKEIVRRESPEEPGKRSRLWFPKDIVQVLEENTGTSRIKIIHLDFPLTDEKEAEVKWDGEAFKKMENLRTLIIKKCHFSKAPLHLPNSLRVLEWLTYPSGELPSDFHPKKLAMLKIPNIRFMSPELAELLKAIHISESFNYDYSQCMTQFPSSIVMLKFYRCDGLRSSKQDGDEKLRVPEILPTSQSVPEVLQTSQRFLQVTMQTSQRLFQAKMMWRLVGFVSSVVGLLCYALSPSFNRLIGGWNIFKLFLYVVLSLVVCATILFAKQSSLLTQHVQLQMCMSSAVLIIISVYSFFYDKAVSGRPETLSLVSNAAFALVSLSLSRLIQFRFDMGIFSYFVGCLTIQLVTINWKLILVAIIFGCPLLIMHSFSDCRLKAGGQVIHSYSDSQPDTGDEGHVVHSSLNSQPEVGRFGQHVIDIHT. 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05440 921 SMART AAA_5 214 350 IPR003593 GO:0016887
Seca9g05440 921 Pfam NB-ARC domain 203 432 IPR002182 GO:0043531
Seca9g05440 921 Gene3D - 12 180 IPR035897 -
Seca9g05440 921 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 688 IPR044974 GO:0006952
Seca9g05440 921 Gene3D - 181 344 IPR027417 -
Seca9g05440 921 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 184 - -
Seca9g05440 921 Gene3D - 351 435 IPR042197 -
Seca9g05440 921 SUPERFAMILY "Winged helix" DNA-binding domain 422 529 IPR036390 -
Seca9g05440 921 SMART till_3 12 154 IPR000157 GO:0007165
Seca9g05440 921 PRINTS Disease resistance protein signature 293 307 - -
Seca9g05440 921 PRINTS Disease resistance protein signature 386 400 - -
Seca9g05440 921 PRINTS Disease resistance protein signature 217 232 - -
Seca9g05440 921 PRINTS Disease resistance protein signature 562 578 - -
Seca9g05440 921 Pfam TIR domain 13 182 IPR000157 GO:0007165
Seca9g05440 921 ProSiteProfiles TIR domain profile. 11 182 IPR000157 GO:0007165
Seca9g05440 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 445 IPR027417 -
Seca9g05440 921 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05440 Seca-Chr9 161227880 161231973 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05440 8 650 WRKY Transcription Factor Family AT4G12020 30.370 3.50e-64 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05440 - - aprc:113866936 983.786