Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca9g05435 | ATGGCAGGTTTAGCATCCTCCTTCTCTTCCTTCACCTACGATGTATTCCTCAGCTTCAGAGGTTCAGATACTCGCCACGGTTTCACTGGTTTTCTCTACAAAGCTCTTCATGACAGCGGCATCCACACCTTCATCGATAACGAGGAGCTTCACGGAGGGGATGAAATAGCACCATCACTTGTGAAGGCAATTAAGGAGTCTAGGATTGCCATCATTGTTCTCTCTAACAACTATGCATCTTCCACATTTTGCTTAGATGAACTTTCCAATATTATTGATTGCATTAAGAGGAAAGGTCGGTTGGTTTTGCCGGTTTTCTATTGTGTGGATCCTTCTGATGTGAGATACCAGAGAGGGACTTATGGTGAAGCATTGGCTAGGCATGAGGAAAAGTTTAAGGATAATAAGGGGAAGGTGCTGAATTGGAGGATGGCTCTCCATCATACAGCTAATTTGTCTGGCTGGCATTTCAAACATGGGGATGGATATGAACATGAGTTTATTGGGAAGATTGTTGAAGAGGTCTCAAGAAAGATTAAGCGTGTTGCTTTACCGGTTGCTGATTGTCCAGTTGGACTGGAGTCCCAAGTGGTAAATGTAAATTTGCTTCTGGATGTTGAGTCCAATGATGAAGTCCACATGGTAGGGATCTATGGAATTGGTGGAATAGGTAAAACAACGCTTGCTTTAGCTGTTTATAATTCAATTGCTGACCATTTTGAAGGTTTGTGTTTTCTTGAAAATATTAGAGAAAATTCAAATAAACATGGATTAGTACATCTCCAGAAGATAATTCTTTCTGAGATAGTTGGGGAGAAGAAAATTAAGTTAGCGAGTGTCAAACAGGGAATTTCAATAATACAACATAGGTTTCGGCAAAAGAAGGTTCTTTTGATTTTGGATGATGTTGACAAGCAGGAGCAGTTACAGGCTATTGTTGGAAGAGCTGACTGGTTTGGTCCTGGTAGTAGAGTCATCATCACGACTCGGGACAGACACTTACTAGCATGTCACAATGTTGAAAGAACATATGAGGTGAAAGAGTTAAACAAGAAAGATGCTTTTGAATTGCTTAGATGGAAAGCTTTCAGAGCTCACAAAGTAAGTCCAAGTTATGCTGACATTTTAAATCGAGCAGTAACTTATGCTTGTGGACTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTATTTGGAAAGAATATAGAGGAATGGGAGTCTGCTTTGAATCGATATGAAAGAATTCCAAATAATAAAATCCTTAAGATACTTAAGGTAAGCTTTGATGCTTTGGAGGAAGAGGAGCAATGTGTTTTTCTTGATATTGCTTGTTGCTTCAATAGATATGAATTGACAGAGGTCATAGATATACTTCGTGCTCATTATGGTGAATGCATGAAACATCATATTGCAGTTTTGGTTGAAAAGTCTCTTTTAAAGATTAGTTGGGATAATAAAGTGATACTACATGATTTGATAGAGAAGATGGGTAAAGAAATTGTCCGACAAGAATCACCAAAAGAGCCAGGGAAGCGCAGTAGGTTATGGTTCCCTAAAGATATAGTTCAAGTTTTGGAAGAAAATGCGGGAACTACTGAAATTGAAATCATATATTTGGATTCCATCTTATTTGAAGAAGTAGCAATAGAGTGGAATGGAAAGGCATTCAAGAAGATGAAAAATCTCAAGACACTTATTATTAGAAATGGTCGTTTTTCCAACGGTCCCCAACACCTTCCAAATAGTTTAAAAATATTGGAATGGTGGAGATATCCTTCACAATATTTACCATTTGATTTTCATCCAAAGAAACTTGTCATATGCAAGTTACCCAACAGTTACTTCACGTCACTCGAGTTGGCTGACTTAATGAAGGCAAGTAAGTTCGTGAATTTGAGAGTTTTGAATTTTGACGACACTAAATGTTTAACACAAATACCTGATCTATCAGGTCTTCAAAATTTAGAAAAGTTGTCATTTCGGTATTGTGAGAATTTAATCACAATTCATGACTCAGTTGGGTTCTTGGATAAACTTAAAATCTTGAATGCTGAATATTGTAACAAGCTTAGGAGTTTCCCACCCATCAAGTTGACATCTCTTCAACAACTTGAACTTTCAAATTGTGATAGTCTTGTGAGGTTTCCTGAAATATTAGGAAAGATGGAAAACTTAACAGGTCTTTATTTGAAGAAAACTCCCATAAAAGAACTGCCATTCTCATTTCGAAATCTTACTCGACTCCGAAGATTATGTTTGACTGATTGTGGAGTTGTTCAGTTACCAAGTAGCATTATCATGATGTCAGAATTGACTGAGATTATGGACGGGGGTAAAGAAAAAGTTAGCTCAATGGTGTCTTCAAATGTAGAACGTCTTCATCTCTCAAGCTGCAATTTGTCAAATGAATTTTTTCTAGTAGGTCTCGCATGGTTTGCTAATGTGAAGCATTTAAACCTTTCGTGTAATAATTTCACAATTCTTCCTGAATGCATCAGAGAATGTCACTTATTGAGGAAGCTTAATTTGAATTATTGCCATCACCTTCGGGAAATTAGAGGGATTCCACCAAACTTGGAACATTTCTCTGCAGCAAACTGTAAATCCTTGACTTCCTCAAGTAGAAGCATGCTACTGAATCAGGAACTACATGAGGCTGGAAACACCGAGTTTTATTTGCCAGGAGCAACAATTCCAAAGTGGTTCGAGCATACTCGATATATCGTAATGCTAGGAATAGATTTCAATATATCGATTGCTTTTAACACTTGA | 2772 | 0.3766 | MAGLASSFSSFTYDVFLSFRGSDTRHGFTGFLYKALHDSGIHTFIDNEELHGGDEIAPSLVKAIKESRIAIIVLSNNYASSTFCLDELSNIIDCIKRKGRLVLPVFYCVDPSDVRYQRGTYGEALARHEEKFKDNKGKVLNWRMALHHTANLSGWHFKHGDGYEHEFIGKIVEEVSRKIKRVALPVADCPVGLESQVVNVNLLLDVESNDEVHMVGIYGIGGIGKTTLALAVYNSIADHFEGLCFLENIRENSNKHGLVHLQKIILSEIVGEKKIKLASVKQGISIIQHRFRQKKVLLILDDVDKQEQLQAIVGRADWFGPGSRVIITTRDRHLLACHNVERTYEVKELNKKDAFELLRWKAFRAHKVSPSYADILNRAVTYACGLPLALEVIGSNLFGKNIEEWESALNRYERIPNNKILKILKVSFDALEEEEQCVFLDIACCFNRYELTEVIDILRAHYGECMKHHIAVLVEKSLLKISWDNKVILHDLIEKMGKEIVRQESPKEPGKRSRLWFPKDIVQVLEENAGTTEIEIIYLDSILFEEVAIEWNGKAFKKMKNLKTLIIRNGRFSNGPQHLPNSLKILEWWRYPSQYLPFDFHPKKLVICKLPNSYFTSLELADLMKASKFVNLRVLNFDDTKCLTQIPDLSGLQNLEKLSFRYCENLITIHDSVGFLDKLKILNAEYCNKLRSFPPIKLTSLQQLELSNCDSLVRFPEILGKMENLTGLYLKKTPIKELPFSFRNLTRLRRLCLTDCGVVQLPSSIIMMSELTEIMDGGKEKVSSMVSSNVERLHLSSCNLSNEFFLVGLAWFANVKHLNLSCNNFTILPECIRECHLLRKLNLNYCHHLREIRGIPPNLEHFSAANCKSLTSSSRSMLLNQELHEAGNTEFYLPGATIPKWFEHTRYIVMLGIDFNISIAFNT. | 924 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca9g05435 | 923 | SUPERFAMILY | "Winged helix" DNA-binding domain | 418 | 526 | IPR036390 | - | |
| Seca9g05435 | 923 | Pfam | TIR domain | 13 | 180 | IPR000157 | GO:0007165 | |
| Seca9g05435 | 923 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 7 | 155 | IPR035897 | - | |
| Seca9g05435 | 923 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 13 | 717 | IPR044974 | GO:0006952 | |
| Seca9g05435 | 923 | Gene3D | - | 177 | 343 | IPR027417 | - | |
| Seca9g05435 | 923 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 9 | 181 | - | - | |
| Seca9g05435 | 923 | Gene3D | - | 10 | 176 | IPR035897 | - | |
| Seca9g05435 | 923 | Pfam | NB-ARC domain | 207 | 416 | IPR002182 | GO:0043531 | |
| Seca9g05435 | 923 | SUPERFAMILY | L domain-like | 504 | 888 | - | - | |
| Seca9g05435 | 923 | ProSiteProfiles | TIR domain profile. | 11 | 179 | IPR000157 | GO:0007165 | |
| Seca9g05435 | 923 | Gene3D | - | 348 | 432 | IPR042197 | - | |
| Seca9g05435 | 923 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 183 | 442 | IPR027417 | - | |
| Seca9g05435 | 923 | Gene3D | Ribonuclease Inhibitor | 529 | 719 | IPR032675 | - | |
| Seca9g05435 | 923 | SMART | till_3 | 12 | 152 | IPR000157 | GO:0007165 | |
| Seca9g05435 | 923 | Gene3D | Ribonuclease Inhibitor | 720 | 890 | IPR032675 | - | |
| Seca9g05435 | 923 | PRINTS | Disease resistance protein signature | 290 | 304 | - | - | |
| Seca9g05435 | 923 | PRINTS | Disease resistance protein signature | 214 | 229 | - | - | |
| Seca9g05435 | 923 | PRINTS | Disease resistance protein signature | 383 | 397 | - | - | |
| Seca9g05435 | 923 | PRINTS | Disease resistance protein signature | 696 | 712 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca9g05435 | Seca-Chr9 | 161092574 | 161095925 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca9g05435 | 9 | 832 | WRKY Transcription Factor Family | AT4G12020 | 30.414 | 2.18e-80 | 284 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca9g05435 | - | - | gmx:100780257 | 1218.76 |